New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4808728	26 (0.450)	4 (0.080)	4/314	NT	14.6%	coding (283/1716 nt)	dsbD‑II	thiol/disulfide interchange protein 2
	?	AE015451	= 4808714	23 (0.430)					coding (269/1716 nt)	dsbD‑II	thiol/disulfide interchange protein 2

CAGACTTCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCGGCCTTCAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCT  >  AE015451/4808519‑4808954                                                                                                                                                                                                                  |                                                                                                                                                                                                                                   cAGACTTCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATtgcctgc                                                                                                                                                                                                           >  1:650530/1‑235 (MQ=255)                                 cTCCCCCGCGACCCCCAGGCCGACGGCCAGATGCGCCTGTACTCCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACg                                                                                                                                                                                                      <  1:216971/208‑1 (MQ=255)                                    aCCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGCCa                                                                                                                                                                                            >  2:983475/1‑215 (MQ=255)                                       cACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCt                                                                                                                                                                     >  1:1080623/1‑235 (MQ=255)                                             cGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCg                                                                                                                                                               <  1:852283/235‑1 (MQ=255)                                              gCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCt                                                                                                                                                                                                                             <  1:629542/172‑1 (MQ=255)                                                 aGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCGACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGGCTTCCAACGcc                                                                                                                                                                                                    >  1:207694/1‑194 (MQ=255)                                                 aGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGcc                                                                                                                                                                                    <  1:361588/210‑1 (MQ=255)                                                                           ttCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTgg                                                                                                                                                                            <  2:12732/192‑1 (MQ=255)                                                                           ttCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTgg                                                                                                                                                                            >  1:12732/1‑192 (MQ=255)                                                                                gATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCtc                                                                                                                             >  1:664209/1‑234 (MQ=255)                                                                                     aGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGctgtcgccgaagaactcgtc                                                                                                                                                                                                                >  1:1005348‑M1/1‑126 (MQ=255)                                                                                                   cTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAg                                                                                                                                                                                           >  1:357894/1‑153 (MQ=255)                                                                                                        ccAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGctgtcgccgaagaactcgtcgtgatggttgagtgccg                                                                                                                                                                                               <  1:734367‑M1/144‑38 (MQ=255)                                                                                                        ccAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGctgtcgccgaagaactcgtcgtgatggttgagtgccg                                                                                                                                                                                               >  2:734364‑M1/1‑107 (MQ=255)                                                                                                          aGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGc                                                                                                                                                                                                     >  2:752630/1‑136 (MQ=255)                                                                                                                   tGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCCAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAg                                                                                        >  1:275161/1‑236 (MQ=255)                                                                                                                    gAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGccgccg                                                                                          >  2:583174/1‑233 (MQ=255)                                                                                                                    gAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAg                                                                                        >  1:139422/1‑235 (MQ=255)                                                                                                                             tGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTCACGCCGGCCGCCGAg                                                                                        >  2:584869/1‑226 (MQ=255)                                                                                                                                ccTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCaa                                                                                                                                                                                                        <  2:357891/111‑1 (MQ=255)                                                                                                                                             cAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGcc                                                                                                                                                          <  1:865373/144‑1 (MQ=255)                                                                                                                                             cAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGcc                                                                                                                                                          >  2:865370/1‑144 (MQ=255)                                                                                                                                                        aCTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGctgtcgccgaagaactcgtcgtgatggttgagtgccggtggcagttgcgggtgttgctcggtggg                                                                                                                                                                   >  2:1005345‑M1/1‑59 (MQ=255)                                                                                                                                                        aCTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGc                                                                                                                                                       >  1:625290/1‑136 (MQ=255)                                                                                                                                                                                            cGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCGGCCTTCAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCg               >  1:465235/1‑236 (MQ=255)                                                                                                                                                                                             gccGACAGCGCGGTATACCGCGACCAGCTTGACCTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCGGCCTTCAGCAAGGCCACCTGGCCTGGa                                 <  1:797093/215‑1 (MQ=255)                                                                                                                                                                                                   aGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCGGCCTTCAGCAAGGc                                              <  2:1045557/198‑1 (MQ=255)                                                                                                                                                                                                     cgcgGTATACCGCGctgtcgccgaagaactcgtcgtgatggttgagtgccggtggcagttgcgggtgttgctcggtgggcaggccatcgaacttcaggcgcttctggtacaggtagtagcccggcttgatctggaagtacaggcgcatctggccgtcggcctggcggtcgtgggtgagcacgaaggcttggtcaaccggcaggaagtctggtttcacatc                      >  1:51422‑M1/1‑14 (MQ=255)                                                                                                                                                                                                      gcgGTATACCGCGctgtcgccgaagaactcgtcgggatggttgagtgccggtggcagttgcgggtgttgctcggtgggcaggccatcgaacttcaggcgcttctggtacaggtagtagcccggcttgatctggaagtacaggcgcatctgg                                                                                          <  2:629539‑M1/151‑139 (MQ=255)                                                                                                                                                                                                      gcgGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCgg                                                           >  2:587104/1‑182 (MQ=255)                                                                                                                                                                                                       cgGTATACCGCGctgtcgccgaagaactcgtcgtgatggttgagtgccggtggcagttgcgggtgttgctcggtgggcaggccatcgaacttcaggcgcttctggtacaggtagtagcccggcttgatctggaagtacaggcgcatctggccgtcggcctggcggtcgtgggtgagcacgaaggcttggtcaaccggcag                                        >  1:160471‑M1/1‑12 (MQ=255)                                                                                                                                                                                                        ggTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCGGCCTTCa                                                     >  1:608460/1‑186 (MQ=255)                                                                                                                                                                                                            taCCGCGctgtcgccgaagaactcgtcgtgatggttgagtgccggtggcagttgcgggtgttgctcggtgggcaggccatcgaacttcaggcgcttctggtacaggtagtagcccggcttgatctggaagtacaggcgcatctggccgtcggcctggcggtcgtgggtgagcacgaaggcttggtcaaccggcaggaagtctggtttcacatcgaacgggttggcttgcaacg  <  1:199601‑M1/233‑227 (MQ=255)                                                                                                                                                                                                             aCCGCGctgtcgccgaagaactcgtcgtgatggttgagtgccggtggcagttgcgggtgttgctcggtgggcaggccatcgaacttcaggcgcttctggtacaggtagtagcccgggttgatctggaagtacaggcgcatctggccgtcggcctggcggtcgtgggtgagcacgaaggcttggtcaaccggcaggaa                                     <  1:285293‑M1/197‑192 (MQ=255)                                                                                                                                                                                                                  gctgtcgccgaagaactcgtcgtgatggttgagtgccggtggcagttgcgggtgttgctcggtgggcaggccatcgaacttcaggcgcttctggtacaggtagtagcccggcttgatctggaagtacaggcgcatctggccgtcggcctggcggtcgtgg                                                                     >  2:634525‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                  gACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCGGCCTTCAGCAAGGCCACCTGGCCTGGAGCCt                             >  2:478808/1‑200 (MQ=255)                                                                                                                                                                                                                  |                                                                                                                                                                                                                                   CAGACTTCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCGGCCTTCAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCT  >  AE015451/4808519‑4808954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.