New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4808728	26 (0.450)	4 (0.080)	4/314	NT	14.6%	coding (283/1716 nt)	dsbD‑II	thiol/disulfide interchange protein 2
	?	AE015451	= 4808714	23 (0.430)					coding (269/1716 nt)	dsbD‑II	thiol/disulfide interchange protein 2

CTGGCCGGCCCGTTGCAAGCCAACCCGTTCGATGTGAAACCAGACTTCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCGGCCTTCAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCG  >  AE015451/4808479‑4808941                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                    cTGGCCGGCCCGTTGCAAGCCAACCCGTTCGATGTGAAACCAGACTTCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCCCGACGAGTTCTTCGGCGCCAg                                                                                                                                                                                                                                     >  1:989763/1‑236 (MQ=255) cTGGCCGGCCCGTTGCAAGCCAACCCGTTCGATGTGAAACCAGACTTCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAg                                                                                                                                                                                                                                     >  1:489219/1‑236 (MQ=255)       ggccCGTTGCAAGCCAACCCGTTCGATGTGAAACCAGACTTCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGT                                                                                                                                                                                                                               >  1:683683‑M1/1‑236 (MQ=255)           cGTTGCAAGCCAACCCGTTCGATGTGAAACCAGACTTCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGcgcggta                                                                                                                                                                                                                              <  1:199601‑M2/233‑8 (MQ=255)                               gATGTGAAACCAGACTTCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGcgcggtataccgcg                                                                                                                                                                                                                       >  1:51422‑M2/1‑206 (MQ=255)                                aTGTGAAACCAGACTTCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGCTCTTCGGCGACAg                                                                                                                                                                                                                                     >  1:649007/1‑205 (MQ=255)                                         cAGACTTCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATtgcctgc                                                                                                                                                                                              >  1:650530/1‑235 (MQ=255)                                              ttCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAACCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGcgcggt                                                                                                                                                                                                                               <  1:285293‑M2/197‑7 (MQ=255)                                                 cTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGcgcggtataccg                                                                                                                                                                                                                         >  1:160471‑M2/1‑188 (MQ=255)                                                                         cTCCCCCGCGACCCCCAGGCCGACGGCCAGATGCGCCTGTACTCCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACg                                                                                                                                                                                         <  1:216971/208‑1 (MQ=255)                                                                            aCCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGCCa                                                                                                                                                                               >  2:983475/1‑215 (MQ=255)                                                                              ccACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGc                                                                                                                                                                                                                                    >  2:634525‑M2/1‑159 (MQ=255)                                                                               cACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCt                                                                                                                                                        >  1:1080623/1‑235 (MQ=255)                                                                                     cGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCg                                                                                                                                                  <  1:852283/235‑1 (MQ=255)                                                                                      gCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCt                                                                                                                                                                                                                <  1:629542/172‑1 (MQ=255)                                                                                         aGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCGACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGGCTTCCAACGcc                                                                                                                                                                                       >  1:207694/1‑194 (MQ=255)                                                                                         aGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGcc                                                                                                                                                                       <  1:361588/210‑1 (MQ=255)                                                                                                   ccAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCCCGACGAGTTCTTCGGCGACAGcgcggtataccgc                                                                                                                                                                                                                        <  2:629539‑M2/151‑14 (MQ=255)                                                                                                                   ttCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTgg                                                                                                                                                               <  2:12732/192‑1 (MQ=255)                                                                                                                   ttCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTgg                                                                                                                                                               >  1:12732/1‑192 (MQ=255)                                                                                                                        gATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCtc                                                                                                                >  1:664209/1‑234 (MQ=255)                                                                                                                             aGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGctgtcgccgaagaactcgtc                                                                                                                                                                                                   >  1:1005348‑M1/1‑126 (MQ=255)                                                                                                                                           cTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAg                                                                                                                                                                              >  1:357894/1‑153 (MQ=255)                                                                                                                                                ccAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGctgtcgccgaagaactcgtcgtgatggttgagtgccg                                                                                                                                                                                  >  2:734364‑M1/1‑107 (MQ=255)                                                                                                                                                ccAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGctgtcgccgaagaactcgtcgtgatggttgagtgccg                                                                                                                                                                                  <  1:734367‑M1/144‑38 (MQ=255)                                                                                                                                                  aGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGc                                                                                                                                                                                        >  2:752630/1‑136 (MQ=255)                                                                                                                                                       cgcCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACGCAGCCCTCCCGACCCGTTCTTCGGCGGCAGCGCGGTATACC                                                                                                                                                                                                                          >  2:758819‑M1/1‑97 (MQ=255)                                                                                                                                                           tGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCCAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAg                                                                           >  1:275161/1‑236 (MQ=255)                                                                                                                                                            gAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGccgccg                                                                             >  2:583174/1‑233 (MQ=255)                                                                                                                                                            gAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAg                                                                           >  1:139422/1‑235 (MQ=255)                                                                                                                                                                     tGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTCACGCCGGCCGCCGAg                                                                           >  2:584869/1‑226 (MQ=255)                                                                                                                                                                        ccTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCaa                                                                                                                                                                                           <  2:357891/111‑1 (MQ=255)                                                                                                                                                                            cccACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGcgcggtataccgcgctgtcgccgaagaactcgtcgtgatggttgagtgccggtggcagt                                                                                                                                                                          >  2:1005345‑M2/1‑65 (MQ=255)                                                                                                                                                                                     cAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGcc                                                                                                                                             <  1:865373/144‑1 (MQ=255)                                                                                                                                                                                     cAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGcc                                                                                                                                             >  2:865370/1‑144 (MQ=255)                                                                                                                                                                                                aCTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGctgtcgccgaagaactcgtcgtgatggttgagtgccggtggcagttgcgggtgttgctcggtggg                                                                                                                                                      >  2:1005345‑M1/1‑59 (MQ=255)                                                                                                                                                                                                aCTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGc                                                                                                                                          >  1:625290/1‑136 (MQ=255)                                                                                                                                                                                                        cGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGcgcggtataccgcgctgtcgccgaagaactcgtcgtgatggttgagtgccggtggcagttgcgggtgttgctcggtgggcaggccatcgaacttcaggcgcttctgg                                                                                                                          >  2:734364‑M2/1‑37 (MQ=255)                                                                                                                                                                                                        cGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGcgcggtataccgcgctgtcgccgaagaactcgtcgtgatggttgagtgccggtggcagttgcgggtgttgctcggtgggcaggccatcgaacttcaggcgcttctgg                                                                                                                          <  1:734367‑M2/144‑108 (MQ=255)                                                                                                                                                                                                                         gacgaGTTCTTCGGCGACAGcgcggtataccgcgctgtcgccgaagaactcgtcgtgatggttgagtgccggtggcagttgcgggtgttgctcggtgggcaggccatcgaacttcaggcgcttctggtacaggtagtagcccggct                                                                                                       >  1:1005348‑M2/1‑20 (MQ=255)                                                                                                                                                                                                                                    cGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCGGCCTTCAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCg  >  1:465235/1‑236 (MQ=255)                                                                                                                                                                                                                                     gccGACAGCGCGGTATACCGCGACCAGCTTGACCTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCGGCCTTCAGCAAGGCCACCTGGCCTGGa                    <  1:797093/215‑1 (MQ=255)                                                                                                                                                                                                                                           aGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCGGCCTTCAGCAAGGc                                 <  2:1045557/198‑1 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                    CTGGCCGGCCCGTTGCAAGCCAACCCGTTCGATGTGAAACCAGACTTCCTGCCGGTTGACCAAGCCTTCGTGCTCACCCACGACCGCCAGGCCGACGGCCAGATGCGCCTGTACTTCCAGATCAAGCCGGGCTACTACCTGTACCAGAAGCGCCTGAAGTTCGATGGCCTGCCCACCGAGCAACACCCGCAACTGCCACCGGCACTCAACCATCACGACGAGTTCTTCGGCGACAGCGCGGTATACCGCGACCAGCTTGAACTGCTATTGCCTGCCAACGCCCAGGGTCAGTTGCGCCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGCGGCCTTCAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCG  >  AE015451/4808479‑4808941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.