New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5502917	16 (0.280)	4 (0.070)	4/322	NT	19.5%	coding (365/432 nt)	PP_4837	conserved protein of unknown function
	?	AE015451	= 5502938	18 (0.330)					coding (386/432 nt)	PP_4837	conserved protein of unknown function

CGCGGGCATGAACATGCCGATGGACATGCCGATGGCGGCTGCCCATCAGCATGGCGGCGACGCCCATCACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGC  >  AE015451/5502693‑5503152                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                            cgcgGGCATGAACATGCCGATGGACATGCCGATGGCGGCTGCCCATCAGCATGGCGGCGACGCCCATCACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGccc                                                                                                                                                                                                                                     <  2:677890/233‑1 (MQ=255)            acatgccgatggacatgccgatggCGGCTGCCCATCAGCATGGCGGCGACGCCCATCACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTc                                                                                                                                                                                                                       <  1:1036074‑M2/236‑2 (MQ=255)                                                                                     tGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATg                                                                                                                                                                                                                                        >  2:15117/1‑146 (MQ=255)                                                                                           gTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTcg                                                                                                                                        <  1:930989/236‑1 (MQ=255)                                                                                                                        aCTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcgttggcgcaa                                                                                                                                                                                                     >  1:15117‑M2/1‑127 (MQ=255)                                                                                                                          tGCAGCCTCTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcgttggcgcaagcaggtgg                                                                                                                                                                                             >  2:1024965‑M2/1‑125 (MQ=255)                                                                                                                             aGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGaatacagcctgccgggcatggccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgc                                                                                                                                                                    >  1:67086‑M1/1‑101 (MQ=255)                                                                                                                                   ttgttCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCCTGCCCGGCCGGCTGGATTccctg                                                                                                                                                                                                                   <  2:162455‑M2/121‑6 (MQ=255)                                                                                                                                                                ccTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAaaca                                                                                                                                                                      >  2:803338/1‑137 (MQ=255)                                                                                                                                                                    cgcccgcccaGCGCCGGCAGCATCGCCCCCACCACCCCCCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgct                                                                                                                                                                   >  1:162457‑M2/2‑83 (MQ=255)                                                                                                                                                                     gCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTgg                                                               >  1:1017221/1‑235 (MQ=255)                                                                                                                                                                            cAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGGCTGCAACAACATTTTGCGCACgc                                                                                                                                                       >  2:94909/1‑139 (MQ=255)                                                                                                                                                                             aGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGaatacagcctgccgggcatggccctggtgcgttggcgcaagcaggggggtggtgggggcgatgctgccggcgctgggcgggcg                                                                                                                                                          >  1:162457‑M1/1‑53 (MQ=255)                                                                                                                                                                             aGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGCCTGacc                                                                                                                     >  2:691504/1‑171 (MQ=255)                                                                                                                                                                              gcgcCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggggcagggccgggcagttgaacaacaggct                                                                                                                   >  1:67086‑M2/1‑73 (MQ=255)                                                                                                                                                                                         cccGCCCCCCCCACCCCCCTGCCTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTgg                                                               <  2:234259/213‑1 (MQ=255)                                                                                                                                                                                            gCCCCCACCACCCACCTGCTTGCTCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTTCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAacaaca                                                                                                                                                                   >  2:980149/1‑112 (MQ=255)                                                                                                                                                                                            gCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGcccctgtctctta                                       >  1:234262/1‑226 (MQ=255)                                                                                                                                                                                                      cccaccTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCaggag                                                                                                                                              <  2:141813/123‑1 (MQ=255)                                                                                                                                                                                                      cccaccTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCaggag                                                                                                                                              >  1:141815/1‑123 (MQ=255)                                                                                                                                                                                                       ccaccTGCTTGCGCCACCGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCgcgc                            <  1:259404/236‑1 (MQ=255)                                                                                                                                                                                                       ccaccTGCTTGCGCCAACGCACCAGGGaatacagcctgccgggcatggccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggggcagggccgggcagttgaacaagaggctgca                                                                                                                >  2:1024965‑M1/1‑27 (MQ=255)                                                                                                                                                                                                              cTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTg                                                                                     >  2:540589/1‑172 (MQ=255)                                                                                                                                                                                                               ttGCGCCAACGCACCAGGGaatacagcctgccgggcatggccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggggcagggccgggcagttgaacaacaggctgcagt                                                                                                              >  1:15117‑M1/1‑19 (MQ=255)                                                                                                                                                                                                                 gcgcCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCa                                                                                                                                                          >  1:824593/1‑100 (MQ=255)                                                                                                                                                                                                                 gcgcCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCa                                                                                                                                                          <  2:824590/100‑1 (MQ=255)                                                                                                                                                                                                                 gcgcCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTg                                                                               >  2:89218/1‑175 (MQ=255)                                                                                                                                                                                                                             cAGGGaatccagccggccgggcagggccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggggcagggccgggcagttgaacaa                                                                                                                         <  2:162455‑M1/121‑117 (MQ=255)                                                                                                                                                                                                                                ggCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCgct                                    >  1:166701/1‑203 (MQ=255)                                                                                                                                                                                                                                 gaatacagcctgccgggcatggccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggggcagggccgggcagttgaacaacaggctgcagtaaccgcacttttcccacatcacatgcaactggccatcgccgccgtggccgtgatgggcgtcgccgccatgctgatgggcagccgccatcggcatgtccatcggcatgt  <  1:1036074‑M1/236‑236 (MQ=255)                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                            CGCGGGCATGAACATGCCGATGGACATGCCGATGGCGGCTGCCCATCAGCATGGCGGCGACGCCCATCACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGC  >  AE015451/5502693‑5503152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.