New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5502917	16 (0.280)	4 (0.070)	4/322	NT	19.5%	coding (365/432 nt)	PP_4837	conserved protein of unknown function
	?	AE015451	= 5502938	18 (0.330)					coding (386/432 nt)	PP_4837	conserved protein of unknown function

ACATGCCGATGGACATGCCGATGGCGGCTGCCCATCAGCATGGCGGCGACGCCCATCACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGAC  >  AE015451/5502704‑5503161                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                acatgccgatggacatgccgatggCGGCTGCCCATCAGCATGGCGGCGACGCCCATCACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTc                                                                                                                                                                                                                                <  1:1036074‑M2/236‑2 (MQ=255)                                                                                gTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTcg                                                                                                                                                 <  1:930989/236‑1 (MQ=255)                                                                                                             aCTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcgttggcgcaa                                                                                                                                                                                                              >  1:15117‑M2/1‑127 (MQ=255)                                                                                                               tGCAGCCTCTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcgttggcgcaagcaggtgg                                                                                                                                                                                                      >  2:1024965‑M2/1‑125 (MQ=255)                                                                                                                        ttgttCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCCTGCCCGGCCGGCTGGATTccctg                                                                                                                                                                                                                            <  2:162455‑M2/121‑6 (MQ=255)                                                                                                                                                     ccTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAaaca                                                                                                                                                                               >  2:803338/1‑137 (MQ=255)                                                                                                                                                         cgcccgcccaGCGCCGGCAGCATCGCCCCCACCACCCCCCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgct                                                                                                                                                                            >  1:162457‑M2/2‑83 (MQ=255)                                                                                                                                                          gCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTgg                                                                        >  1:1017221/1‑235 (MQ=255)                                                                                                                                                                 cAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGGCTGCAACAACATTTTGCGCACgc                                                                                                                                                                >  2:94909/1‑139 (MQ=255)                                                                                                                                                                  aGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGCCTGacc                                                                                                                              >  2:691504/1‑171 (MQ=255)                                                                                                                                                                   gcgcCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggggcagggccgggcagttgaacaacaggct                                                                                                                            >  1:67086‑M2/1‑73 (MQ=255)                                                                                                                                                                              cccGCCCCCCCCACCCCCCTGCCTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTgg                                                                        <  2:234259/213‑1 (MQ=255)                                                                                                                                                                                 gCCCCCACCACCCACCTGCTTGCTCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTTCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAacaaca                                                                                                                                                                            >  2:980149/1‑112 (MQ=255)                                                                                                                                                                                 gCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGcccctgtctctta                                                >  1:234262/1‑226 (MQ=255)                                                                                                                                                                                           cccaccTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCaggag                                                                                                                                                       <  2:141813/123‑1 (MQ=255)                                                                                                                                                                                           cccaccTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCaggag                                                                                                                                                       >  1:141815/1‑123 (MQ=255)                                                                                                                                                                                            ccaccTGCTTGCGCCACCGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCgcgc                                     <  1:259404/236‑1 (MQ=255)                                                                                                                                                                                                   cTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTg                                                                                              >  2:540589/1‑172 (MQ=255)                                                                                                                                                                                                      gcgcCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCa                                                                                                                                                                   >  1:824593/1‑100 (MQ=255)                                                                                                                                                                                                      gcgcCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCa                                                                                                                                                                   <  2:824590/100‑1 (MQ=255)                                                                                                                                                                                                      gcgcCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTg                                                                                        >  2:89218/1‑175 (MQ=255)                                                                                                                                                                                                                     ggCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCgct                                             >  1:166701/1‑203 (MQ=255)                                                                                                                                                                                                                             ccGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGc                                                     >  2:465980/1‑187 (MQ=255)                                                                                                                                                                                                                                  aGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGAc  >  2:653837/1‑233 (MQ=255)                                                                                                                                                                                                                                         aTTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCt                                                 >  2:808829/1‑179 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                ACATGCCGATGGACATGCCGATGGCGGCTGCCCATCAGCATGGCGGCGACGCCCATCACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGAC  >  AE015451/5502704‑5503161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.