New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 1395221 | 39 (0.980) | 4 (0.110) | 4/304 | NT | 11.1% | coding (958/1047 nt) | ruvB | Holliday junction ATP‑dependent DNA helicase RuvB |
? | AE015451 | = 1395205 | 29 (0.800) | coding (942/1047 nt) | ruvB | Holliday junction ATP‑dependent DNA helicase RuvB |
GGTTTCGACCATTCCGACCGTCGCCTGCTGCTGACCATGATCGAGAAGTTCGATGGCGGCCCGGTGGGCGTGGACAACCTGGCTGCAGCCATCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/1395041‑1395221 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacgcggccgcgtggCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACATCCAGCAGGTTCAGCGCCATGTCAGCCACGGCCTTGGTGATCTGGC < AE015451/1395205‑1394982 GGTTTCGACCATTCCGACCGTCGCCTGCTGCTGACCATGATCGAGAAGTTCGATGGCGGCCCGGTGGGCGTGGACAACCTGGCTGCAGCCATCAGCGACGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGC > 2:197411/1‑166 GTCGCCTGCTGCTGACCATGATCGAGAAGTTCGATGGCGGCCCGGTGGGCGTGGACAACCTGGCTGCAGCCATCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGT < 2:640151/219‑1 TTCGATGGCGGCCCGGTGGGCGTGGACAACCTGGCTGCAGCCCTCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAG < 2:661410/175‑1 GTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGC > 1:125670/1‑62 GTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGC < 2:125670/62‑1 TACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGT > 1:441122/1‑163 ACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACATCCAGCAGGTTCAGCGCCA < 1:640152/227‑1 GCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACATCCAGCAGGTTCAGCGCCATGTCAGCCACGGCCTTGGTGA > 1:65989/1‑235 CGGCCGCGTGACGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACATCCAGCAGGTTCAGCGCCATGTCAGCCACGGCCTTGGTGATCTGGC < 1:726769/235‑1 CCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGA > 1:566787/1‑184 GGTTTCGACCATTCCGACCGTCGCCTGCTGCTGACCATGATCGAGAAGTTCGATGGCGGCCCGGTGGGCGTGGACAACCTGGCTGCAGCCATCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/1395041‑1395221 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacgcggccgcgtggCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACATCCAGCAGGTTCAGCGCCATGTCAGCCACGGCCTTGGTGATCTGGC < AE015451/1395205‑1394982 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |