New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2021476 =	51 (1.280)	3 (0.080)	3/314	NT	6.7%	intergenic (+13/‑426)	PP_1798/gmd	Outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
	?	AE015451	2021501 =	36 (0.960)					intergenic (+38/‑401)	PP_1798/gmd	Outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase

TGCGCTAAGGTCGATGAAGCCAAACCATCTTGACCTCGCCTGACACGCAATGGGAACAGGACGCAAAAGGGACCGGGGCTAAATTGATACTGTGCGCTTCACTGGTTGGCGCTGCGCTTCAGCCCCTGAAGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2021611‑2021476 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaagcgcagCGCCAACCAGTGAAGCGCACAGTATCAATTTAGCCCCGGTCCCTTTTGCGTCCTGTTCCCATTGCGTGTCAGGCGAGGTCAAGATGGTTTGGCTTC  >  AE015451/2021501‑2021596                                                                                                                                                                                                                                          TGCGCGAAGGTCGATGAAGCCAAACCATCTTGACCTCGCCTGACACGCAATGGGAACAGGACGCAAAAGGGACCGGGGCTAAATTGATACTGTGCGCTTCACTGGTTGGCGCTGCGCTTCAGCCCCTGAAGCGCAGCGCCAACCAGTGAAGCGCACAGTATCAATTTAGCCCCGGTCCCTTTTGCGTCCTGTTCCCATTGCGTGTCAGGCGA                      <  2:381145/212‑1  GCGCTAAGGTCGATGAAGCCAAACCATCTTGACCTCGCCTGACACGCAATGGGAACAGGACGCAAAAGGGACCGGGGCTAAATTGATACTGTGCGCTTCACTGGTTGGCGCTGCGCTTCAGCCCCTGAAGCGCAGCGCCAACCAGTGAAGCGCACAGTATCAATTTAGCCCCGG                                                           <  1:34859/174‑1                                                       AACAGGACGCAAAAGGGACCGGGGCTAAATTGATACTGTGCGCTTCACTGGTTGGCGCTGCGCTTCAGCCCCTGAAGCGCAGCGCCAACCAGTGAAGCGCACAGTATCAATTTAGCCCCGGTCCCTTTTGCGTCCTGTTCCCATTGCGTGTCAGGCGAGGTCAAGATGGTTTGGCTTC  <  1:413287/178‑1                                                                                                                                                                                                                                          TGCGCTAAGGTCGATGAAGCCAAACCATCTTGACCTCGCCTGACACGCAATGGGAACAGGACGCAAAAGGGACCGGGGCTAAATTGATACTGTGCGCTTCACTGGTTGGCGCTGCGCTTCAGCCCCTGAAGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2021611‑2021476 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaagcgcagCGCCAACCAGTGAAGCGCACAGTATCAATTTAGCCCCGGTCCCTTTTGCGTCCTGTTCCCATTGCGTGTCAGGCGAGGTCAAGATGGTTTGGCTTC  >  AE015451/2021501‑2021596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.