New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2233066 =	17 (0.430)	4 (0.120)	4/290	NT	19.2%	intergenic (+26/+205)	PP_1971/PP_t63	conserved protein of unknown function/tRNA‑Asn
	?	AE015451	2233158 =	19 (0.550)					intergenic (+118/+113)	PP_1971/PP_t63	conserved protein of unknown function/tRNA‑Asn

GGGTAAACCCGCTCCTACGACGGCCTGTGTTCAACCACCGATGTGTGTCCACCACCGATCCGGTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2233152‑2233066 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCGCGGAATCTGCGCGTATCTTACTGATTGCCCGGGAGA  >  AE015451/2233158‑2233378                                                                                                                                                                                                                                                                                                                      GGGTAAACCCGCTCCTACGACGGCCTGTGTTCAACCCCCGATGTGTGTCCACCACCGATCCGGTGTA                                                                                                                                                                                                                                                   <  2:149390/67‑1     AAACCCGCTCCTACGACGGCCTGTGTTCAACCACCGATGTGTGTCCACCACCGATCCGGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGC                                                                                                                                                                                  <  1:323584/128‑1     AAACCCGCTCCTACGACGGCCTGTGTTCAACCACCGATGTGTGTCCACCACCGATCCGGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGC                                                                                                                                                                                  >  2:323583/1‑128                            TGTTCAACCACCGATGTGTGTCCACCACCGATCCGGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGAC                                                >  1:635911/1‑235                                                       CCGATCCGGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCGCGGAATCTGCGCGTAT                      <  2:635910/234‑1                                                                   AGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCGCGGAATCTGCGCGTATCTTACTGATTctg         >  1:75636/1‑232                                                                         GGGTTTCCCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTT                                                                                                                                                                                           <  2:326773/51‑1                                                                         GGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCGCGGAATCTGCGCGTATCTTACTGATTGCCCGGGAGA  >  1:673653/1‑236                                                                           GTTTACCGGCGAAAGGGCCGGGCCTGCT                                                                                                                                                                                                                <  2:145287/28‑1                                                                             gTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCGCGGAATCTG                             <  1:2460/204‑1                                                                             TTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTG                                                          <  1:624794/176‑1                                                                             TTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTG                                                          >  2:624793/1‑176                                                                                    CGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTT                                                                                                                        <  1:326774/107‑1                                                                                       AAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGC                                                                                                                                          >  2:531723/1‑86                                                                                                                                                                                                                                                                                                                      GGGTAAACCCGCTCCTACGACGGCCTGTGTTCAACCACCGATGTGTGTCCACCACCGATCCGGTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2233152‑2233066 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCGCGGAATCTGCGCGTATCTTACTGATTGCCCGGGAGA  >  AE015451/2233158‑2233378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.