New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2233066 =	17 (0.430)	4 (0.120)	4/290	NT	19.2%	intergenic (+26/+205)	PP_1971/PP_t63	conserved protein of unknown function/tRNA‑Asn
	?	AE015451	2233158 =	19 (0.550)					intergenic (+118/+113)	PP_1971/PP_t63	conserved protein of unknown function/tRNA‑Asn

GGTGGAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCGCGGAATCTGCGCGTATCTTACTGATTGCCCGGGAGA  >  AE015451/2232947‑2233378                                                                                                                                                                                                                    |                                                                                                                                                                                                                             ggtggAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAgggccg                                                                                                                                                                                                                        >  1:678487/1‑218 (MQ=255)   tggAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTcc                                                                                                                                                                                                     >  1:477432/1‑235 (MQ=255)                                                 ggTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCGCCGTTGCTGGCCAATAATTCCAGCGCAACg                                                                                                                                                           >  1:67418/1‑231 (MQ=255)                                                        aGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGc                                                                                                                                                                                                             >  1:142583/1‑174 (MQ=255)                                                                ggCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGACAAAGCCCCCg                                                                                                                                               >  1:51083/1‑228 (MQ=255)                                                                  cGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCa                                                                                                                                                                   >  1:379188/1‑206 (MQ=255)                                                                                 ggCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCg                                                                                                                               >  1:655382/1‑227 (MQ=255)                                                                                               ggCCTCTGTTGGCGATGCCGGCTTCTTCGCGGTTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATg                                                                                                                >  1:519356/1‑228 (MQ=255)                                                                                                                  ggCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAgcgc                                                                                                                                                               >  2:574310/1‑162 (MQ=255)                                                                                                                                 aaacccgctcctacgacggcctgtgttcaaccaccgatgtgtgtccaccaccgatccggtgtaggagcgggtttacccgcgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGc                                                                                                                                                                                  <  1:323584‑M2/45‑1 (MQ=255)                                                                                                                                 aaacccgctcctacgacggcctgtgttcaaccaccgatgtgtgtccaccaccgatccggtgtaggagcgggtttacccgcgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGc                                                                                                                                                                                  >  2:323583‑M2/84‑128 (MQ=255)                                                                                                                                                      cGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATCATTCCAGCGCAACGAAAAAGCCCCAGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAAcc                                                                                     >  1:48880/1‑200 (MQ=255)                                                                                                                                                      cGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTgcgc                                                                                                                                    >  2:289187/1‑153 (MQ=255)                                                                                                                                                      cGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTcc                                                                                                       >  1:177632/1‑182 (MQ=255)                                                                                                                                                      cGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCgc                                                 >  1:109863/1‑235 (MQ=255)                                                                                                                                                       ggtggtGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGTGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATcc                                                                                                                                <  1:67364/156‑1 (MQ=255)                                                                                                                                                        tgttcaaccaccgatgtgtgtccaccaccgatccggtgtaggagcgggtttacccgcgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGAc                                                >  1:635911‑M2/61‑235 (MQ=255)                                                                                                                                                                  cacaTCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCAt                                                                                                                                  <  1:56095/143‑1 (MQ=255)                                                                                                                                                                      tCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTc                                                                                          >  2:32545/1‑179 (MQ=255)                                                                                                                                                                      tCGGGGGTTGAACACAGGCCGTCGTAGGGGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCTGTTCACCGTTGCTGGCCAATAATTCCAgc                                                                                                                                                                 <  1:34034/108‑1 (MQ=255)                                                                                                                                                                        ggtggtTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGACAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGc                                                                                                                                                                              >  2:26557/1‑93 (MQ=255)                                                                                                                                                                                   ccgatccggtgtaggagcgggtttacccgcgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCGCGGAATCTGCGCGTAt                      <  2:635910‑M2/201‑1 (MQ=255)                                                                                                                                                                                     aGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCAt                                                             <  2:519355/193‑1 (MQ=255)                                                                                                                                                                                        ccGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTAcc                                                   >  2:380213/1‑200 (MQ=255)                                                                                                                                                                                               aggagcgggtttacccgcgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCGCGGAATCTGCGCGTATCTTACtgattctg         >  1:75636‑M2/22‑232 (MQ=255)                                                                                                                                                                                                     gggtttccccgcgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGtt                                                                                                                                                                                           <  2:326773‑M2/36‑1 (MQ=255)                                                                                                                                                                                                     gggtttacccgcgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCGCGGAATCTGCGCGTATCTTACTGATTGCCCGGgaga  >  1:673653‑M2/16‑236 (MQ=255)                                                                                                                                                                                                       gtttaccggcgaaAGGGCCGGGCctgct                                                                                                                                                                                                                <  2:145287‑M2/15‑1 (MQ=255)                                                                                                                                                                                                         ttacccgcgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTg                                                          >  2:624793‑M2/12‑176 (MQ=255)                                                                                                                                                                                                         ttacccgcgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTg                                                          <  1:624794‑M2/165‑1 (MQ=255)                                                                                                                                                                                                         gtacccgcgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCGCGGAATCTg                             <  1:2460‑M2/194‑1 (MQ=255)                                                                                                                                                                                                                cgaaAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGctt                                                                                                                        <  1:326774‑M2/103‑1 (MQ=255)                                                                                                                                                                                                                   aAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGttgc                                                                                                                                          >  2:531723‑M2/2‑86 (MQ=255)                                                                                                                                                                                                                    |                                                                                                                                                                                                                             GGTGGAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATGTCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCGCGGAATCTGCGCGTATCTTACTGATTGCCCGGGAGA  >  AE015451/2232947‑2233378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.