New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2233066 =	17 (0.430)	4 (0.120)	4/290	NT	19.2%	intergenic (+26/+205)	PP_1971/PP_t63	conserved protein of unknown function/tRNA‑Asn
	?	AE015451	2233158 =	19 (0.550)					intergenic (+118/+113)	PP_1971/PP_t63	conserved protein of unknown function/tRNA‑Asn

CCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAACCTGGAGGCGCTGATACATCGCAATGTGTTTTACCAACTGGTGGAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATG  >  AE015451/2232845‑2233268                                                                                                                                                                                                                              |                                                                                                                                                                                                           tctcccgggcaatcagtaagatacgcgcagattccgcgatagctcagtcggtagagcaaatgactgttaatcattgggtccctggttcgagtccaggtcgcggagccagacattgaagaagcccccggatgcgcaagcaaccgggggctttttcgttgcgctggaattattggccagcaacggtgaacggcgggcggagattggccagcaggcccggccctTTCGCGGGTAAAccc                                                                                                                                                                                              >  1:673653‑M1/222‑236 (MQ=255)        gtggtgATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAACCTGGAGGCGCTGATACATCGCAATGTGTTTTACCAACTGGTGGAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTa                                                                                                                                                                                       <  2:394739/236‑1 (MQ=255)        cagaatcagtaagatacgcgcagattccgcgatagctcagtcggtagagcaaatgactgttaatcattgggtccctggttcgagtccaggtcgcggagccagacattgaagaagcccccggatgcgcaagcaaccgggggctttttcgttgcgctggaattattggccagcaacggtgaacggcgggcggagattggccagcaggcccggccctTTCGCGGGTAAACCCGCTCCt                                                                                                                                                                                        >  1:75636‑M1/215‑235 (MQ=255)                     atacgcgcagattccgcgatagctcagtcggtagagcaaatgactgttaatcattgggtccctggttcgagtccaggtcgcggagccagacattgaagaagcccccggatgcgcaagcaaccgggggctttttcgttgcgctggaattattggccagcaacggtgaacggcgggcggagattggccagcaggcccggccctTTCGCGGGTAAACCCGCTCCTACACCGGATCgg                                                                                                                                                                            <  2:635910‑M1/33‑1 (MQ=255)                            cagattccgcgatagctcagtcggtagagcaaatgactgttaatcattgggtccctggttcgagtccaggtcgcggagccagacattgaagaagcccccggatgcgcaagcaaccgggggctttttcgttgcgctggaattattggccagcaacggtgaacggcgggcggagattggccagcaggcccggccctTTCGCGGGtac                                                                                                                                                                                                  <  1:2460‑M1/11‑2 (MQ=255)                                               gtcggtagagcaaatgactgttaatcattgggtccctggttcgagtccaggtcgcggagccagacattgaagaagcccccggatgcgcaagcaaccgggggctttttcgttgcgctggaattattggccagcaacggtgaacggcgggcggagattggccagcaggcccggccctTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAaca                                                                                                                                                 >  1:635911‑M1/176‑235 (MQ=255)                                                         caaatgactgttaatcattgggtccctggttcgagtccaggtcgcggagccagacattgaagaagcccccggatgcgcaagcaaccgggggctttttcgttgcgctggaattattggccagcaacggtgaacggcgggcggagattggccagcaggcccggccctTTCGCGGGTaa                                                                                                                                                                                                  >  2:624793‑M1/166‑176 (MQ=255)                                                         caaatgactgttaatcattgggtccctggttcgagtccaggtcgcggagccagacattgaagaagcccccggatgcgcaagcaaccgggggctttttcgttgcgctggaattattggccagcaacggtgaacggcgggcggagattggccagcaggcccggccctTTCGCGGGTaa                                                                                                                                                                                                  <  1:624794‑M1/11‑1 (MQ=255)                                                                  tGGAGGCGCTGATACATCGCAATGTGTTTTACCAACTGGTGGAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCg                                                                                                                                                                                  <  2:647427/183‑1 (MQ=255)                                                                    gAGGCGCTGATACGTGGCAATGTGTTTGACCAACTGGTGGAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTaa                                                                                                                                                                                                  <  2:686436/165‑1 (MQ=255)                                                                                           gtTTTACCAACTGGTGGGGCTGGCGGGGCCGCATGTGATCGACGGGGAGGCATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGacacac                                                                                                                                                                <  1:37686/176‑1 (MQ=255)                                                                                                       ggtggAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAgggccg                                                                                                          >  1:678487/1‑218 (MQ=255)                                                                                                         tggAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCg                                                                                                                                                                                  <  2:140729/144‑1 (MQ=255)                                                                                                         tggAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCg                                                                                                                                                                                  >  1:140729/1‑144 (MQ=255)                                                                                                         tggAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTcc                                                                                       >  1:477432/1‑235 (MQ=255)                                                                                                                       aagcccccggatgcgcaagcaaccgggggctttttcgttgcgctggaattattggccagcaacggtgaacggcgggcggagattggccagcaggcccggccctTTcg                                                                                                                                                                                                         <  1:326774‑M1/4‑1 (MQ=255)                                                                                                                          cATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGAGTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACAt                                                                                                                                                              <  2:735072/147‑1 (MQ=255)                                                                                                                                         gcaaccgggggctttttcgttgcgctggaattattggccagcaacggtgaacggcgggcggagattggccagcaggcccggccctt                                                                                                                                                                                                            >  2:531723‑M1/86‑86 (MQ=255)                                                                                                                                                       ggTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCGCCGTTGCTGGCCAATAATTCCAGCGCAACg                                             >  1:67418/1‑231 (MQ=255)                                                                                                                                                              aGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGc                                                                                               >  1:142583/1‑174 (MQ=255)                                                                                                                                                              aGCCGGGGGGCGGTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAac                                                                                                                                                  <  2:624674/123‑1 (MQ=255)                                                                                                                                                                      ggCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGACAAAGCCCCCg                                 >  1:51083/1‑228 (MQ=255)                                                                                                                                                                        cGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCa                                                     >  1:379188/1‑206 (MQ=255)                                                                                                                                                                                 gcaacggtgaacggcgggcggagattggccagcaggcccggccctTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGttt                                                                                                                          >  2:323583‑M1/46‑128 (MQ=255)                                                                                                                                                                                 gcaacggtgaacggcgggcggagattggccagcaggcccggccctTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGttt                                                                                                                          <  1:323584‑M1/83‑1 (MQ=255)                                                                                                                                                                                       ggCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCg                 >  1:655382/1‑227 (MQ=255)                                                                                                                                                                                          aacggcgggcggagattggccagcaggcccggccctTTCGCGGGGAAAccc                                                                                                                                                                                              <  2:326773‑M1/15‑1 (MQ=255)                                                                                                                                                                                                     ggCCTCTGTTGGCGATGCCGGCTTCTTCGCGGTTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATg  >  1:519356/1‑228 (MQ=255)                                                                                                                                                                                                               agcaggcccggccctTTCGCCGGTAAAc                                                                                                                                                                                                <  2:145287‑M1/13‑1 (MQ=255)                                                                                                                                                                                                                        ggCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAgcgc                                                 >  2:574310/1‑162 (MQ=255)                                                                                                                                                                                                                              |                                                                                                                                                                                                           CCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAACCTGGAGGCGCTGATACATCGCAATGTGTTTTACCAACTGGTGGAGCTGGCGGTGCCGCATGTGATCGACGGGGAGGAATGGCTTGGGGTGTGGAGCCGGGGGGCGTTTTACCCGATTGGGCGCAGTGATTGAGGCCTCTGTTGGCGATGCCGGCTTCTTCGCGGGTAAACCCGCTCCTACACCGGATCGGTGGTGGACACACATCGGTGGTTGAACACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGGCCAATAATTCCAGCGCAACGAAAAAGCCCCCGGTTGCTTGCGCATCCGGGGGCTTCTTCAATG  >  AE015451/2232845‑2233268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.