New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3073301 =	22 (0.550)	3 (0.080)	3/318	NT	14.0%	coding (1007/1671 nt)	PP_2683	putative sensory box histidine kinase/response regulator
	?	AE015451	3073609 =	16 (0.420)					coding (1315/1671 nt)	PP_2683	putative sensory box histidine kinase/response regulator

GACGATGGCCAGCCCGAGGCCAACGCCCTTGCGATCCGCTGCACGCCCCACATCCAGCTGGTTGAACTCGAGGAATATGTCCTGCAGCCGGTCCTGCGCAATGCCCCGTCCGGTATCCCACACCTCCAGCCGCAAATGGCCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3073446‑3073301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgccgcCTGCTGGTACTGGACAACGAAGTGAGCATA  >  AE015451/3073609‑3073638                                                                                                                                                                                  gccgcTGGCCAGCCCGAGGCCAACGCCCTGGCGATCCGCTGCACGCCCCACATCCAGCTGGTTGAACTCGAGGAATATGTCCTGCAGCCGGTCCTGCGCAATGCCCCGTCCGGTATCCCACACCTCCAGCCGCAAATGGCCGCCGCCTGCTG                          <  2:197059/147‑1                                                                                     CAGCCGGTCCTGCGCAATGCCCCGTCCGGTATCCCACACCTCCAGCCGCAAATGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATA  >  1:278304/1‑92                                                                                     CAGCCGGTCCTGCGCAATGCCCCGTCCGGTATCCCACACCTCCAGCCGCAAATGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATA  <  2:278303/92‑1                                                                                                                                                                                  GACGATGGCCAGCCCGAGGCCAACGCCCTTGCGATCCGCTGCACGCCCCACATCCAGCTGGTTGAACTCGAGGAATATGTCCTGCAGCCGGTCCTGCGCAATGCCCCGTCCGGTATCCCACACCTCCAGCCGCAAATGGCCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3073446‑3073301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgccgcCTGCTGGTACTGGACAACGAAGTGAGCATA  >  AE015451/3073609‑3073638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.