New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3073301 =	22 (0.550)	3 (0.080)	3/318	NT	14.0%	coding (1007/1671 nt)	PP_2683	putative sensory box histidine kinase/response regulator
	?	AE015451	3073609 =	16 (0.420)					coding (1315/1671 nt)	PP_2683	putative sensory box histidine kinase/response regulator

TGTGGCCGTGTACCGCCTGGACGAGCTGTTCGCGCCGCTGGTCTCGGAGTTCAGCCCGGTGGCCGAGGCGGCGGGCCTGAAGCTGCATGCACGCATAGCCGACTACGCCATCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATCGCCAAGATACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGC  >  AE015451/3073089‑3073506                                                                                                                                                                                                                     |                                                                                                                                                                                                              tgtgGCCGTGTACCGCCTGGACGAGCTGTTCGCGCCGCTGGTCTCGGAGTTCAGCCCGGTGGCCGAGGCGGCGGGCCTGAAGCTGCATGCACGCATAGCCGACTACGCCATCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGa                                                                                                                                                                                          >  1:363217/1‑234 (MQ=255)             ccGCCTGGACGAGCTGTTCGCGCCGCTGGTCTCGGAGTTCAGCCCGGTGGCCGAGGCGGCGGGCCTGAAGCTGCATGCACGCATAGCCGACTACGCCATCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTg                                                                                                                                                                                            >  2:675420/1‑220 (MQ=255)             ccGCCTGGACGAGCTGTTCGCGCCGCTGGTCTCGGAGTTCAGCCCGGTGGCCGAGGCGGCGGGCCTGAAGCTGCATGCACGCATAGCCGACTACGCCATCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTg                                                                                                                                                                                            <  1:675421/220‑1 (MQ=255)                           tGTTCGCGCCGCTGGTCTCGGAGTTCAGCCCGGTGGCCGAGGCGGCGGGCCTGAAGCTGCATGCACGCATAGCCGACTACGCCATCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTgc                                                                                                                                                               >  1:13152/1‑235 (MQ=255)                                                               ccGAGGCGGCGGGCCTGAAGCTGCATGCACGCATAGCCGACTACGCCATCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGAt                                                                                                                                                                                >  1:12055/1‑182 (MQ=255)                                                               ccGAGGCGGCGGGCCTGAAGCTGCATGCACGCATAGCCGACTACGCCATCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAggc                                                                                                                                             >  1:103462/1‑216 (MQ=255)                                                                                         gcaCGCATAGCCGACTACGCCATCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCgg                                                                                                 >  1:55217/1‑235 (MQ=255)                                                                                                      aCTACGCCATCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGATGTGTGGCATGCAGCGGATCGCAAGGGc                                                                                      >  1:405910/1‑233 (MQ=255)                                                                                                            ccATCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAg                                                                                                    >  2:504442/1‑213 (MQ=255)                                                                                                              aTCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCa                                                                                                                                                                                                      <  1:360913/113‑1 (MQ=255)                                                                                                              aTCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCa                                                                                                                                                                                                      >  2:360912/1‑113 (MQ=255)                                                                                                                              ggTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCa                                                                   >  1:626174/1‑228 (MQ=255)                                                                                                                                ttGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCg                                                         <  1:641054/236‑1 (MQ=255)                                                                                                                                                tGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAg                                                           >  1:29716/1‑218 (MQ=255)                                                                                                                                                   gcAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTgggtt                                                                                                                                                                                >  2:172665/1‑96 (MQ=255)                                                                                                                                                     aaCTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAg                                                                                                                                               >  2:139669/1‑129 (MQ=255)                                                                                                                                                          ccTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATTGcc                                                  >  1:310901/1‑217 (MQ=255)                                                                                                                                                              aGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATc                                                     <  1:218307/210‑1 (MQ=255)                                                                                                                                                                     catGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGGCCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGAtgt                                                                                                               <  2:136281/143‑1 (MQ=255)                                                                                                                                                                                       tatgctcacttcgttgtccagtaccagcagGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTg                                                                                                                                                  <  2:278303‑M1/62‑1 (MQ=255)                                                                                                                                                                                       tatgctcacttcgttgtccagtaccagcagGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTg                                                                                                                                                  >  1:278304‑M1/31‑92 (MQ=255)                                                                                                                                                                                       aggGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACggg                                                                                                                                                                      >  2:419269/1‑72 (MQ=255)                                                                                                                                                                                       aggGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACggg                                                                                                                                                                      <  1:419270/72‑1 (MQ=255)                                                                                                                                                                                       aggGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATCGCCAAGATACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGc  <  1:476738/236‑1 (MQ=255)                                                                                                                                                                                                               cagcagGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCCAGGGCGTTGGCCTCGGGCtggccagcggc                                                              <  2:197059‑M1/146‑6 (MQ=255)                                                                                                                                                                                                                     |                                                                                                                                                                                                              TGTGGCCGTGTACCGCCTGGACGAGCTGTTCGCGCCGCTGGTCTCGGAGTTCAGCCCGGTGGCCGAGGCGGCGGGCCTGAAGCTGCATGCACGCATAGCCGACTACGCCATCAGCACTGACCTGCGGTTGCTCACACGCATCCTGCGCAACTTCCTCAGCAACGCTTGCCGGTATACCGAGGAGGGGCGGATCCTGCTCGGGGCAAGGCGCCGCGGCGGCCATTTGCGGCTGGAGGTGTGGGATACCGGACGGGGCATTGCGCAGGACCGGCTGCAGGACATATTCCTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATCGCCAAGATACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGC  >  AE015451/3073089‑3073506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.