New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3073301 =	22 (0.550)	3 (0.080)	3/318	NT	14.0%	coding (1007/1671 nt)	PP_2683	putative sensory box histidine kinase/response regulator
	?	AE015451	3073609 =	16 (0.420)					coding (1315/1671 nt)	PP_2683	putative sensory box histidine kinase/response regulator

CTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATCGCCAAGATACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATACTCGAGAGCATGGGCGCGCTGTTGGGGCAGTGGGGGTGCGAAGTGGTCACGGCTACCGACCGGGAGGGCGCCTTGCTGGCGTTGCAGGGGCGAGCCCCGGAACTGATTCTGGCCGACTACCACCTGGACCATGGCGTAGTGGGGT  >  AE015451/3073375‑3073783                                                                                                                                                                                                                                           |                                                                                                                                                                               cTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATCGCCAAGATACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGgccgccgcc                                                                                                                                                                                <  1:504443/235‑1 (MQ=255) cTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATCGCCAAGATACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGgccgccgcc                                                                                                                                                                                <  1:139669/235‑1 (MQ=255)  tCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATCGCCAAGATACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCct                                                                                                                                                                               >  1:404901/1‑235 (MQ=255)            ccAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATCGCCAAGATACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTg                                                                                                                                                                     >  1:58943/1‑235 (MQ=255)                                 aGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATCGCCAAGATACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATACTct                                                                                                                                               >  1:739843/1‑235 (MQ=255)                                    ggATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATCGCCAAGATACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAAc                                                                                                                                                               <  2:739842/217‑1 (MQ=255)                                                     gCCTCGGGCTGGCCATCGTCGAGCGGATCGCCAAGATACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGa                                                                                                                                                        >  2:385304/1‑207 (MQ=255)                                                                                  gCCACGGTACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATACTCGAGAGCATGGGCGCGCTGTTGGGGCAGTGGGGGTGCGAAGTGGTCACgg                                                                                               <  1:172665/235‑1 (MQ=255)                                                                                         gccgctggccagcccgaggccaacgccctggcgatccgctgcacgccccacatccagctggttgaactcgaggaatatgtcctgcagccggtcctgcgcaatgccccgtccggtatcccacacctccagccgcaaatggccgccgcctgctg                                                                                                                                                                           <  2:197059‑M2/6‑1 (MQ=255)                                                                                                           aaGTGCGGTCGTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATACTCGAGAGCATGGGCGCGCTGTTGGGGCAGTGGGGGTGCGAAGTGGTCAc                                                                                                 >  2:403179/1‑208 (MQ=255)                                                                                                                  gTCGTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATACTCGAGAGCATGGGCGCGCTGTTggg                                                                                                                         <  2:363216/177‑1 (MQ=255)                                                                                                                   tggTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATACTCGAGAGCATggg                                                                                                                                     <  2:55217/162‑1 (MQ=255)                                                                                                                           ggggCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCACAGTCTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGAcc                                                                                                                                                                 >  2:65145/1‑127 (MQ=255)                                                                                                                                    cTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGACATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAACgccgc                                                                                                                                                          >  2:33999/1‑122 (MQ=255)                                                                                                                                        gtgtTCAGCATCGAGGTACCACTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGTTGCCCAGCGTCTGTGATCCGCTGCCGGGCCGACGCCTGCTGGTACTGGACAACGAAGt                                                                                                                                                          <  2:287731/122‑1 (MQ=255)                                                                                                                                                  tCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATACTCGAGAGCATGGGCGCGCTGTTGGGGCAGTGGGGGTGCGAAGTGGTCACGGCTACCGACCGTGAGGGCGCCTTGCTGGCGTTGCAGGGGCGAGCCCCGGAACTGATTCTGGCCGa                               <  1:411427/235‑1 (MQ=255)                                                                                                                                                        tACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGTCTGCTGGTACTGGACAACGAAGTGAGCATACTCGAGAGCATGGGCGCGCTGTTGGGGCAGCGGGGGTGCGAAGTGGTCa                                                                                                  >  2:644261/1‑162 (MQ=255)                                                                                                                                                                             cagccggtcctgcgcaatgccccgtccggtatcccacacctccagccgcaaatggccgccgcCTGCTGGTACTGGACAACGAAGTGAGCATa                                                                                                                                                   <  2:278303‑M2/30‑1 (MQ=255)                                                                                                                                                                             cagccggtcctgcgcaatgccccgtccggtatcccacacctccagccgcaaatggccgccgcCTGCTGGTACTGGACAACGAAGTGAGCATa                                                                                                                                                   >  1:278304‑M2/63‑92 (MQ=255)                                                                                                                                                                               ctggctgTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATACTCGAGAGCATGGGCGCGCTGTTGGGGCAGTGGGGGTGCGAAGTGGTCACGGCTACCGACCGGGAGGGCGCCTTGCTGGCGTTGCAGGGGCGAGCCCCGGAACTGATTCTGGCCGACTACCACCTGGACCATGGCGTAGTGGGGt  <  1:421222/235‑1 (MQ=255)                                                                                                                                                                                  gctgTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATACTCGAGAGCATGGGCGCGCTGTTGGGGCAGTGGGGGTGCGAAGt                                                                                                       >  2:84461/1‑131 (MQ=255)                                                                                                                                                                                    tgTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGGTGCCGGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATACTCGAGAGCATGGGCGCGCTGTTGGGGCAGTGGGGGCGCGAAGTGGTCACgg                                                                                               >  2:174309/1‑137 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                               CTCGAGTTCAACCAGCTGGATGTGGGGCGTGCAGCGGATCGCAAGGGCGTTGGCCTCGGGCTGGCCATCGTCGAGCGGATCGCCAAGATACTCGGTTACCGGATCGAAGTGCGGTCGTGGCTGGGGCGTGGCTCGGTGTTCAGCATCGAGGTACCTCTTGGCAAAGAAGTGCCGCTGGCTGTTCACCAGGCTGTGCCGCTGCCCAGCGTCGGTGATCCGCTGCCGGGCCGCCGCCTGCTGGTACTGGACAACGAAGTGAGCATACTCGAGAGCATGGGCGCGCTGTTGGGGCAGTGGGGGTGCGAAGTGGTCACGGCTACCGACCGGGAGGGCGCCTTGCTGGCGTTGCAGGGGCGAGCCCCGGAACTGATTCTGGCCGACTACCACCTGGACCATGGCGTAGTGGGGT  >  AE015451/3073375‑3073783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.