New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3208442	20 (0.500)	3 (0.080)	3/314	NT	10.4%	coding (2091/2415 nt)	PP_2812	putative Transporter
	?	AE015451	= 3208493	33 (0.880)					coding (2142/2415 nt)	PP_2812	putative Transporter

TCGGGCAACGCCGGCGTTCTGGCCGCTATCAACGAAGAAGTGGAGAAGAGCGAAACTCCCATGCTGCTGTATGTCTATGCCGCGATCGCGCTGCTGGTGTTCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATC‑GGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3208200‑3208442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgtgggcCAGGTGCAGTTGCAGCCGGTTGTAGATGTAGAAGGCGTAGTCGACACCAATGCCCACGGCCAACACCATCACCGGCAAGGTAGCAATGGTCAGGCCGATCTGCAGTTCCTTCATGAACCAGTAGCCGATGAAGGTGCCGATGGTCAAAGGCAGGCAACAAACCAGCACTGCCCGCAGGTCGCGGTAGACGGCGAACACCAGCAGCGCGATCGCG  <  AE015451/3208493‑3208280                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCGGGCAACGCCGGCGTTCTGGCCGCTATCAACGAAGAAGTGGAGAAGAGCGAAACTCCCATGCTGCTGTATGTCTATGCCGCGATCGCGCTGCTGGTGTTCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATC‑GGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTG                                                                                                                                                                                                                                 <  1:149832/234‑1                      GCCGCTATCAACGAAGAAGTGGAGAAGAGCGAAACTCCCATGCTGCTGTATGTCTATGCCGCGATCGCGCTGCTGGTGTTCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATC‑GGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTG                                                                                                                                                                                                                           >  2:535951/1‑219                                                                                                     TCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGC                                                                                                                                                                                                                               <  1:11528/137‑1                                                                                                                                                               CACCTTCATC‑GGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCCGTGATGGTGTTGGC                                                                                                                                                                                                                               >  1:450162/1‑78                                                                                                                                                                  CTTCATC‑GTCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCCAGGTGCAGTTGCAGCCGGTTGTAGATG                                                                                                                                                                                            <  2:10864/110‑1                                                                                                                                                                                 GGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCCAGGTGCAGTTGCAGCCGGTTGTAGATGTAGAAGGCGTAGTGGACACCAATGCCCACGGCCAACACCATCACCGGCAAGGTAGCAATGGTCAGGCCGAGCTGCAGTTCCTTCATGAACCAGTAGCCGATGAAGGTGCCGAGGGGCAAAGGCAGGCAACAAACga                                                    >  1:453446/1‑230                                                                                                                                                                                                                 ATTGCTACCTTGCCGGTGATGGTGCTGGCCGTGGGCCAGGGGCAGTTGCAGCCGGCTGTAGATGTAGAAGGCGGAGTCGACACCAATGCCCACGGCCAACACCATCAC                                                                                                                                                >  2:416841/1‑108                                                                                                                                                                                                                                          gtGCCGTGGGCAAGGTGCAGTTGCAGCCGGTTGTAGAGGTAGAAGGCGTAGTCGACACCAATGCCCACGGCCAACACCATCACCGGCAAGGTAGCAATGGTCAGGCCGATCTGCAGTTCCTTCATGAACCAGTAGCCGATGAAGGTGCCGATGGTCAAAGGCAGGCAACAAACCAGCACTGCCCGCAGGTCGCGG                                <  2:34668/193‑1                                                                                                                                                                                                                                          TGGCCGTGGGCCAGGTGCAGTTGCAGCCGGTTGTAGATGTAGAAG                                                                                                                                                                                      >  1:598572/1‑45                                                                                                                                                                                                                                          TGGCCGTGGGCCAGGTGCAGTTGCAGCCGGTTGTAGATGTAGAAG                                                                                                                                                                                      <  2:598571/45‑1                                                                                                                                                                                                                                              CGTGGGCCAGGTGCAGTTGGAGCCGGTTGTAGATGTAGAAGGCGTAGTCGACACCAATGCCCACGGCCAACACCATCACCGGCAAGGTAGCAATGGTCAGGCCGATCTGCAGTTCCTTCGTGAACCAGTAGCCGATGAAGGTGCCGATGGTCAAAGGCAGGCAACAAACCAGCACTGCCCGCAGGGCGCGGTAGACGGCGAACACCAGCAGCGCGATCGCG  >  1:464642/1‑221                                                                                                                                                                                                                                               GTGGGCCAGGTGCAGTTGCAGCCGGTTGTAGATGTAGAAGGCGTAGTCGACACCAATGCCCACGGCCAACACCATCACCGGCAAGGTAGCAATGGTC                                                                                                                             <  1:363438/97‑1                                                                                                                                                                                                                                               GTGGGCCAGGTGCAGTTGCAGCCGGTTGTAGATGTAGAAGGCGTAGTCGACACCAATGCCCACGGCCAACACCATCACCGGCAAGGTAGCAATGGTC                                                                                                                             >  2:363437/1‑97                                                                                                                                                                                                                                               GTGGGCCAGGTGCAGTTGCAGCCGGTTGTAGATGTAGAAGGCGTAGGCGACACCAATGCCCACGGCCAACACCATCACCGGCAAGGTAGCAATGGTCAGGCCGATCTGCAGTTCCTTCATGAACCAGTAGCCGATGAAGGTGCCGATGGTCAAAGGCAGGCAACAAACCAGCACTGCCCGCAGGTCGCGGTAG                             >  2:588083/1‑193                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCGGGCAACGCCGGCGTTCTGGCCGCTATCAACGAAGAAGTGGAGAAGAGCGAAACTCCCATGCTGCTGTATGTCTATGCCGCGATCGCGCTGCTGGTGTTCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATC‑GGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3208200‑3208442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgtgggcCAGGTGCAGTTGCAGCCGGTTGTAGATGTAGAAGGCGTAGTCGACACCAATGCCCACGGCCAACACCATCACCGGCAAGGTAGCAATGGTCAGGCCGATCTGCAGTTCCTTCATGAACCAGTAGCCGATGAAGGTGCCGATGGTCAAAGGCAGGCAACAAACCAGCACTGCCCGCAGGTCGCGGTAGACGGCGAACACCAGCAGCGCGATCGCG  <  AE015451/3208493‑3208280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.