New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3208442	20 (0.500)	3 (0.080)	3/314	NT	10.4%	coding (2091/2415 nt)	PP_2812	putative Transporter
	?	AE015451	= 3208493	33 (0.880)					coding (2142/2415 nt)	PP_2812	putative Transporter

GGAGAAGAGCGAAACTCCCATGCTGCTGTATGTCTATGCCGCGATCGCGCTGCTGGTGTTCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCGTTGCGACGATCTTCACCGCCATTACCCTGGCGGTGGGCGTGGCTACCTGGGCGTTCTCGGAGCTCAAGTTCCAGGCCGACATGGGCAAGCTGCTGGCCTTCATGTTCATCGTCAACATGGTCATGGCC  >  AE015451/3208241‑3208676                                                                                                                                                                                                          |                                                                                                                                                                                                                                           ggAGAAGAGCGATACTCCCATGCTGCTGTATGTCTATGCCGCGATCGCGCTGCTGGTGTTCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAAcc                                                                                                                                                                                                          <  1:288025/236‑1 (MQ=255)             aaCTCCCATGCTGCTGTATGTCTATGCCGCGATCGCGCTGCTGGTGTTCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTATGCCTTCTACATCTACAACCGGc                                                                                                                                                                                                       >  1:516134/1‑227 (MQ=255)                  ccATGCTGCTGTATGTCTATGCCGCGATCGCGCTGCTGGTGTTCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTg                                                                                                                                                                                         <  1:641782/236‑1 (MQ=255)                                  cTATGCCGCGATCGCGCTGCTGGTGTTCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGt                                                                                                                                                                            >  2:484963/1‑233 (MQ=255)                                        cgcgATCGCGCTGCTGGTGTTCGCCGTCTACCGCGCCCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCACGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTCCAACTGCACCTGgcccacg                                                                                                                                                                                  >  1:464642‑M2/1‑214 (MQ=255)                                                     ctgGTGTTCGCCGTCTACCGCGGCCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCa                                                                                                                                                      <  1:530585/236‑1 (MQ=255)                                                      tgGTGTTCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCAc                                                                                                                                                     <  1:389274/236‑1 (MQ=255)                                                       ggTGTTCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCAc                                                                                                                                                     <  1:553644/235‑1 (MQ=255)                                                                   cTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGCCTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGgcccac                                                                                                                                                                                   >  2:588083‑M2/1‑187 (MQ=255)                                                                      ccGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACCTCTACAACCGGCTGCAACTGCACCTTgcccacggcac                                                                                                                                                                              <  2:34668‑M2/195‑12 (MQ=255)                                                                      ccGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCAc                                                                                                                                                     <  2:502732/220‑1 (MQ=255)                                                                                          tcgttTGTTGCCTGCCTTTGCCCCTCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGCTCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCCACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGgcccacggccaacaccatcaccggcaaggtagcaatggtcaggccgatctgcagttccttcatgaacc                                                                                                                     >  1:453446‑M2/3‑164 (MQ=255)                                                                                                                     gCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCGTTGCGACGATCTTCACCGCCATTACCCTGGCGGTGGGCg                                                                                           >  2:739970/1‑231 (MQ=255)                                                                                                                      cACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCg                                                                                                                                  >  1:508657/1‑191 (MQ=255)                                                                                                                         cTTCATCGTCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCcaggtgcagttgcagccggttgtagatg                                                                                                                                                                                                                <  2:10864‑M1/110‑29 (MQ=255)                                                                                                                                      tGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCg                                                                                                                                                          >  1:562369/1‑151 (MQ=255)                                                                                                                                       ggTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCcaggtgcagttgcagccggttgtagatgtagaaggcgtagtggacaccaatgcccacggccaacaccatcaccggcaaggtagcaatggtcaggccgagctgcagttccttcatgaaccagtagccgatgaaggtgccgaggggcaaaggcaggcaacaaacga                                                                        >  1:453446‑M1/1‑68 (MQ=255)                                                                                                                                        gTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTgg                                                                                                                                     <  1:507116/170‑1 (MQ=255)                                                                                                                                         ttCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCGCGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGCGGt                                                                                                                                       >  2:684116/1‑167 (MQ=255)                                                                                                                                                         aGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCGGTGCGACGATCTTCACCGCCATTACCCTGGCGGTGGGCGTGGc                                                                                       >  1:223854/1‑199 (MQ=255)                                                                                                                                                                ccTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGa                                                                                                                                          >  2:100559/1‑141 (MQ=255)                                                                                                                                                                   gACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGgcccac                                                                                                                                                                                   <  1:363438‑M2/97‑7 (MQ=255)                                                                                                                                                                   gACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGgcccac                                                                                                                                                                                   >  2:363437‑M2/1‑91 (MQ=255)                                                                                                                                                                      cATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCGTTGCGACGATCTTCACCGCCATTACCCTGGCGGTGGGCGTGGCTACCTGGGCGTTCTCGGAGCTCAAGTTCCAGGCCGACATGGGCAAgctgc                                     <  1:484964/236‑1 (MQ=255)                                                                                                                                                                       aTTGCTACCTTGCCGGTGATGGTGCTGGCCGTGGGCcaggggcagttgcagccggctgtagatgtagaaggcggagtcgacaccaatgcccacggccaacaccatcac                                                                                                                                                                    >  2:416841‑M1/1‑36 (MQ=255)                                                                                                                                                                         tGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCGTTGCGACGATCTTCACCGCCATTACCCTGGCGGTGGGCGTGGCTACCTGGGCGTTCTCGGAGCTCAAGTTCCAGGCCGACATgg                                              <  1:352301/224‑1 (MQ=255)                                                                                                                                                                                  gCCGGGGATGGGGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACACCCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCGTTGCGACGATCTTCACCGCCATTACCCTGGCGGTGGGCGTGGCTACCTGGGCGTTCTCGGAGCTCAAGTTCCAGGcc                                                     <  2:634463/208‑1 (MQ=255)                                                                                                                                                                                      gTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTCCGCCTTCTACATCTACAGCCGGCTGCAACTGCCCCTGgcccacggccagcaccatcaccggcaaggtagcaat                                                                                                                                                     >  2:416841‑M2/1‑72 (MQ=255)                                                                                                                                                                                                tGGCCGTGGGCcaggtgcagttgcagccggttgtagatgtagaag                                                                                                                                                                                                          >  1:598572‑M1/1‑11 (MQ=255)                                                                                                                                                                                                tGGCCGTGGGCcaggtgcagttgcagccggttgtagatgtagaag                                                                                                                                                                                                          <  2:598571‑M1/45‑35 (MQ=255)                                                                                                                                                                                                tGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCGTTGCGACGATCTTCACCGCCATTACCCTGGCGGTGGGCGTGGCTACCTGGGCGTTCTCGGAGCTCAAGTTCCAGGCCGACATGGGCAAGCTGCTGGCCTTCATGTTCATCGTCAACATg           <  1:452712/236‑1 (MQ=255)                                                                                                                                                                                                gtgccGTGGGCaaggtgcagttgcagccggttgtagaggtagaaggcgtagtcgacaccaatgcccacggccaacaccatcaccggcaaggtagcaatggtcaggccgatctgcagttccttcatgaaccagtagccgatgaaggtgccgatggtcaaaggcaggcaacaaaccagcactgcccgcaggtcgcgg                                                    <  2:34668‑M1/193‑185 (MQ=255)                                                                                                                                                                                                    cGTGGGCcaggtgcagttggagccggttgtagatgtagaaggcgtagtcgacaccaatgcccacggccaacaccatcaccggcaaggtagcaatggtcaggccgatctgcagttccttcgtgaaccagtagccgatgaaggtgccgatggtcaaaggcaggcaacaaaccagcactgcccgcagggcgcggtagacggcgaacaccagcagcgcgatcgcg                      >  1:464642‑M1/1‑7 (MQ=255)                                                                                                                                                                                                     gTGGGCcaggtgcagttgcagccggttgtagatgtagaaggcgtagtcgacaccaatgcccacggccaacaccatcaccggcaaggtagcaatggtc                                                                                                                                                 >  2:363437‑M1/1‑6 (MQ=255)                                                                                                                                                                                                     gTGGGCcaggtgcagttgcagccggttgtagatgtagaaggcgtagtcgacaccaatgcccacggccaacaccatcaccggcaaggtagcaatggtc                                                                                                                                                 <  1:363438‑M1/97‑92 (MQ=255)                                                                                                                                                                                                     gTGGGCcaggtgcagttgcagccggttgtagatgtagaaggcgtaggcgacaccaatgcccacggccaacaccatcaccggcaaggtagcaatggtcaggccgatctgcagttccttcatgaaccagtagccgatgaaggtgccgatggtcaaaggcaggcaacaaaccagcactgcccgcaggtcgcggtag                                                 >  2:588083‑M1/1‑6 (MQ=255)                                                                                                                                                                                                     gTGGGCATTGGTGTCGACTACGCCt                                                                                                                                                                                                                         <  2:675014/25‑1 (MQ=255)                                                                                                                                                                                                       gggCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCGTTGCGACGATCTTCACCGCCATTACCCTGGCGGTGGGCGTGGCTACCTGGGCGTTCTCGGAGCTCAAGTTCCAGGCCGACATGGGCAAGCTGCTGGCCTTCATGTTCATCGTCAACATGGTCATg     >  2:450240/1‑235 (MQ=255)                                                                                                                                                                                                        ggCAATGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCGTTGCGACGATCTTCACCGCCATTACCCTGGCGGTGGGCGTGGCTACCTGGGCGTTCTCGGAGCTCAAGTTCCAGGCCGACATGGGCAAGCTGCTGGCCTTCATGTTCATCGTCAACATg           <  2:408256/228‑1 (MQ=255)                                                                                                                                                                                                        gccATGGGTGTCGACTACCCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCCCGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCGTTGCGACGATCTTCACCGCCAtt                                                                                                           <  1:249137/130‑1 (MQ=255)                                                                                                                                                                                                          cATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCGTTGCGACGATCTTCACCGCCATTACCCTGGCGGTGGGCGTGGCTACCTGGGCGTTCTCGGAGCTCAAGTTCCAGGCCGACATGGGCAAGCTGCTGGCCTTCATGTTCATCGTCAACATGGTCATGGcc  >  1:244741/1‑235 (MQ=255)                                                                                                                                                                                                          |                                                                                                                                                                                                                                           GGAGAAGAGCGAAACTCCCATGCTGCTGTATGTCTATGCCGCGATCGCGCTGCTGGTGTTCGCCGTCTACCGCGACCTGCGGGCAGTGCTGGTTTGTTGCCTGCCTTTGACCATCGGCACCTTCATCGGCTACTGGTTCATGAAGGAACTGCAGATCGGCCTGACCATTGCTACCTTGCCGGTGATGGTGTTGGCCGTGGGCATTGGTGTCGACTACGCCTTCTACATCTACAACCGGCTGCAACTGCACCTGGCCCACGGCCAGTCGATCACCAAGGCGGTCGAGCACGCATTGCTCGAGGTGGGCGTTGCGACGATCTTCACCGCCATTACCCTGGCGGTGGGCGTGGCTACCTGGGCGTTCTCGGAGCTCAAGTTCCAGGCCGACATGGGCAAGCTGCTGGCCTTCATGTTCATCGTCAACATGGTCATGGCC  >  AE015451/3208241‑3208676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.