New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3556422 =	22 (0.550)	3 (0.080)	3/330	NT	12.6%	coding (839/1188 nt)	PP_3140	Glycosyl transferase, group 2 family protein
	?	AE015451	3556443 =	20 (0.510)					coding (860/1188 nt)	PP_3140	Glycosyl transferase, group 2 family protein

CCAGGCCAACACCACGGCAAAGGCCAGCAAGGCCAAACCGGCAAAGGCGAGCCACGCGGGCGCCGCCAGGCCGAACAGCAGGTACGCCAGCCAGGTCACCAGGTTAAGCCCGAGCAAGGTCAGTACCAGCAACGCCAGGGGCGGCACCAGCAAGTCCAGGGTCAAGGCCGCCAGGCTAGCGTTACGCTGGGTGATGGCAGCCATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3556630‑3556422 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTG  >  AE015451/3556443‑3556504                                                                                                                                                                                                                                                                                 CCAGGCCAACACCACGGCAAAGGCCAGCAAGGCCAAACCGGCAAAGGCGAGCCACGCGGGCGCCGCCAGGCCGAACAGCAGGTACGCCAGCCAGGTCACCAGGTTAAGCCCGAGCAAGGTCAGTACCAGCAACGCCAGGGGCGGCACCAGCAAGTCCAGGGTCAAGGCCGCCAGGCTAGCGTTACGCTGGGTGATGGCAGCCATCGCCCAGCGTAACGCTAGCCTGGCGGCCTTG                                      <  1:640407/235‑1                                             AGGCGAGCCACGCGGGCGCCGCCAGGCCGAACAGCAGGTACGCCAGCCAGGTCACCAGGTTAAGCCCGAGCAAGGTCAGTACCAGCAACGCCAGGGGCGGCACCAGCAAGTCCAGGGTCAAGGCCGCCAGGCTAGCGTTACGCTGGGTGATGGCAGCCATCGCCC                                                                >  2:676140/1‑165                                                                                 GGTACGCCAGCCAGGTCACAAGGTTAAGCCCGAGCAAGGTCAGTACCAGCAACGCCAGGGGCGGCACCAGCAAGTCCAGGGTCAAGGCCGCCAGGCTAGCGTTACGCTGGGTGATGGCAGCCATCGCCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGT                     <  1:34372/172‑1                                                                                                                                                           cCCAGGGTCAAGGCCGCCAGGCTAGCGTTACGCTGGGTGATGGCAGCCATCGCCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTG  <  1:701125/116‑1                                                                                                                                                                                                                                                                                 CCAGGCCAACACCACGGCAAAGGCCAGCAAGGCCAAACCGGCAAAGGCGAGCCACGCGGGCGCCGCCAGGCCGAACAGCAGGTACGCCAGCCAGGTCACCAGGTTAAGCCCGAGCAAGGTCAGTACCAGCAACGCCAGGGGCGGCACCAGCAAGTCCAGGGTCAAGGCCGCCAGGCTAGCGTTACGCTGGGTGATGGCAGCCATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3556630‑3556422 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTG  >  AE015451/3556443‑3556504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.