New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3556422 =	22 (0.550)	3 (0.080)	3/330	NT	12.6%	coding (839/1188 nt)	PP_3140	Glycosyl transferase, group 2 family protein
	?	AE015451	3556443 =	20 (0.510)					coding (860/1188 nt)	PP_3140	Glycosyl transferase, group 2 family protein

AACCTGGCCAATGGTCATCTGGTCGAGGATGTGAAGCTGGGCCTGGACCTTTGCCAGCAGGGCAAACCGCCTGCTTTCTGCCCCGAGGCACTGGTCACTAGCCAGTTCCCACTTAGCCAGCAGGGCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACCTGGCTGGCGTACCTGCTGTTCGGCCTGGCGGCGCCCGCGTGGCTCGCCTTTGCCGGTTTGGCCTTGCTGGCCTTTGCCGTGGTGTTGGCCTGGGCGCGCTTCTGCCGTGAAGTGATACCGTTCT  >  AE015451/3556229‑3556661                                                                                                                                                                                                                       |                                                                                                                                                                                                                           aaCCTGGCCAATGGTCATCTGGTCGAGGATGTGAAGCTGGGCCTGGACCTTTGCCAGCAGGGCAAACCGCCTGCTTTCTGCCCCGAGGCACTGGTCACTAGCCAGTTCCCACTTAGCCAGCAGGGCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTggcgg                                                                                                                                                                                                        <  1:722593/235‑1 (MQ=255)      ccaggccaacaccacggcaaaggccagcaaggccaaaccggcaaaggcgagccacgcgggcgccgccaggccgaacagcaggtacgccagccaggtcaccaggttaagcccgagcaaggtcagtaccagcaacgccaggggcggcaccagcaagtccagggtcaaggccgccaggctagcgttacgctgggtgatggcagccatcgcccAGCGTAACGCTAGCCTGGCGGCCTTg                                                                                                                                                                                                   <  1:640407‑M2/26‑1 (MQ=255)                          aGGATGTGAAGCTGGGCCTGGACCTTTGCCAGCAGGGCAAACCGCCTGCTTTCTGCCCCGAGGCACTGGTCACTAGCCAGTTCCCACTTAGCCAGCAGGGCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTgcc                                                                                                                                                                               >  1:317446/1‑235 (MQ=255)                                            tGGACCTTTGCCAGCAGGGCAAACCGCCTGCTTTCTGCCCCGAGGCACTGGTCACTAGCCAGTTCCCACTTAGCCAGCAGGGCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAg                                                                                                                                                                                                                           >  2:453455/1‑173 (MQ=255)                                                      ccAGCAGGGCAAACCGCCTGCTTTCTGCCCCGAGGCACTGGTCACTAGCCAGTTCCCACTTAGCCAGCAGGGCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTggcgg                                                                                                                                                                                                        <  1:532834/182‑1 (MQ=255)                                                              gCAAACCGCCTGCTTTCTGCCCCGAGGCACTGGTCACTAGCCAGTTCCCACTTAGCCAGCAGGGCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCt                                                                                                                                           >  2:381816/1‑235 (MQ=255)                                                                          cTTTCTGCCCCGAGGCACTGGTCACTAGCCAGTTCCCACTTAGCCAGCAGGGCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGc                                                                                                                                                                                                               >  2:15873/1‑155 (MQ=255)                                                                           tttCTGCCCCGAGGCACTGGTCACTAGCCAGTTCCCACTTAGCCAGCAGGGCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGAcc                                                                                                                              <  1:557127/235‑1 (MQ=255)                                                                               tGCCCCGAGGCACTGGTCACTAGCCAGTTCCCACTTAGCCAGCAGGGCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACctg                                                                                                                            <  2:637750/233‑1 (MQ=255)                                                                                 ccccGAGGCACTGGTCACTAGCCAGTTCCCACTTAGCCAGCAGGGCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCCGCCATCACCCAGCGTAACGCTAGCCTggcgg                                                                                                                                                                                                        <  2:703598/155‑1 (MQ=255)                                                                                      ggtacgccagccaggtcacaaggttaagcccgagcaaggtcagtaccagcaacgccaggggcggcaccagcaagtccagggtcaaggccgccaggctagcgttacgctgggtgatggcagccatcgcccAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGt                                                                                                                                                                                  <  1:34372‑M2/43‑1 (MQ=255)                                                                                                             ccACTTAGCCAGCAGGGCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACCTGGCTGGCGTACCTGCTGTTCGGCCTGGCGgcgc                                                                                            >  2:223972/1‑235 (MQ=255)                                                                                                                           gggCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCCTCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGCTCGCTGCCATCACCCAGCGTACCGCt                                                                                                                                                                                                                  >  2:47564/1‑103 (MQ=255)                                                                                                                               cTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACCTGGCTGGCGTACCTGCTGTTCGGCCTGGCGGCGCCCGCGt                                                                                      <  1:170065/223‑1 (MQ=255)                                                                                                                                    cagcaacgccaggggcggcaccagcaagtccagggtcaaggccgccaggctagcgttacgctGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCtggg                                                                                                                                                                                           <  1:701125‑M1/55‑2 (MQ=255)                                                                                                                                                ccGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCCCCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACctggctg                                                                                                                        <  1:180679/172‑1 (MQ=255)                                                                                                                                                      ggAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCCCCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACCTGGCTGGCGTACCTGCTGTTCGGCCTGGCGGCGCCCGCGTGGCTCGCCTTTGCCGGTTTGGCCTTGCTGGCCTTTg                                                  <  1:149777/236‑1 (MQ=255)                                                                                                                                                       accagcaagtccagggtcaaggccgccaggctagcgttacgctGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTTGTGACCTGGCTGGCGTAcc                                                                                                                 <  1:34372‑M1/129‑1 (MQ=255)                                                                                                                                                                cccagggtcaaggccgccaggctagcgttacgctgggtgatggcagccatcgcccAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTg                                                                                                                                                               <  1:701125‑M2/62‑1 (MQ=255)                                                                                                                                                                     gggCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCggg                                                                                                                                             <  1:584603/130‑1 (MQ=255)                                                                                                                                                                     gggCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCggg                                                                                                                                             >  2:584602/1‑130 (MQ=255)                                                                                                                                                                        caaggccgccaggctagcgttacgctGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACCTGGCTGGCGTACCTGCTGTTCGGCCTGGCGGCGCCCGCGTGGCTCGCCTTTGCCGGTTTGGCCTTGCTGGCCTTTGCCGTGGTGTTGGCCTgg                                 <  1:640407‑M1/209‑1 (MQ=255)                                                                                                                                                                               cTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACCTGGCTGGCGTACCTGCTGTTCGGCCTGGCGGCGCCCGCGTGGCTCGCCTTTGCCGGTTTGGCCTTGCTGGCCTTTGCCGTGGTGTTGGCCTGGgcgcg                            <  2:397847/233‑1 (MQ=255)                                                                                                                                                                                                  GGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACCTGGCTGGCGTACCTGCTGTTCGGCCTGGCGGCGCCCGCGTGGCTCGCCt                                                                             >  2:676140‑M1/1‑165 (MQ=255)                                                                                                                                                                                                      gATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGCCCTGGCTGGCGTACCTGCTGTTCGGCCTGGCGGCGCCCGCGTGGCTCGCCTTTGCCGGTTTGTCCTTGCTGGCCCTTGCCgtggc                                           >  2:252861/1‑194 (MQ=255)                                                                                                                                                                                                      gATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACCTGGCTGGCGTACCTGCTGTTCGGCCTGGCGGCGCCCGCGTGGCTCGCCTTTGCCGGTTTGGCCTTGCTGGCCTTTGCCGTGGTGTTGGCCTGGGCGCGCTTCTGCCGTGAAGTGATACCGTtct  <  1:223972/236‑1 (MQ=255)                                                                                                                                                                                                      gATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACCTGGCTGGCGTACCTGCTGTTCGGCCTGGCGGCGCCCGCGTGGCTCGCCTTTGCCGGTTTGGCCTTGCTGGCCTTTGCCGTGGTGTTGGCCTGGGCGCGCTTCTGCCGTGAAGTGATACCGTtc   >  1:328720/1‑235 (MQ=255)                                                                                                                                                                                                          gCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACCTGGCTGGCGTACCTGCTGTTCGGCCTGGCGGCGCCCGCGTGGCTCGCCTTTGCCGGTTTGGCCTTGCTGGCCTTTGCCGTGGTGTTGGCCTGGGCGCGCTTCTGCCGTGAAGTGATACCGTtc   >  2:697221/1‑231 (MQ=255)                                                                                                                                                                                                                       |                                                                                                                                                                                                                           AACCTGGCCAATGGTCATCTGGTCGAGGATGTGAAGCTGGGCCTGGACCTTTGCCAGCAGGGCAAACCGCCTGCTTTCTGCCCCGAGGCACTGGTCACTAGCCAGTTCCCACTTAGCCAGCAGGGCCTCAACAGCCAACGTACCCGCTGGGAGCACGGCCATCTGGGCTTGATGCTTGCCGACGCACCCAAGCGGGCGATGGCTGCCATCACCCAGCGTAACGCTAGCCTGGCGGCCTTGACCCTGGACTTGCTGGTGCCGCCCCTGGCGTTGCTGGTACTGACCTTGCTCGGGCTTAACCTGGTGACCTGGCTGGCGTACCTGCTGTTCGGCCTGGCGGCGCCCGCGTGGCTCGCCTTTGCCGGTTTGGCCTTGCTGGCCTTTGCCGTGGTGTTGGCCTGGGCGCGCTTCTGCCGTGAAGTGATACCGTTCT  >  AE015451/3556229‑3556661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.