New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3593008	25 (0.630)	4 (0.110)	4/316	NT	14.7%	coding (44/981 nt)	PP_3171	conserved protein of unknown function
	?	AE015451	= 3593013	23 (0.610)					coding (49/981 nt)	PP_3171	conserved protein of unknown function

AGCGCCACCTGTCCCCTCGGGTACGCGGCTTCATCGACTTGTTGGTGGCCACCTGGGAGCCAGGCGTGCCTTGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3592782‑3593008 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgaaggTCTTGCCTTCGCCGATCATGACCAGATCCAGTACGGACAGTGCAGTCATGGGGTCTCCAGAGGGATTATCAGTGGCTGCCAGTTTCCATGCTGCGCCGCCAGCGATAAACCCAATTTCAGGCCCGGCATAGGGGCCTGGCATTCCCCAATCAGTATTCCCAAGGCACGCCTGGCTCCCAGGTGGCCACCAACAAGTCGATGAAGCCGCGTACCCGAGGGGACAGGTGGCGC  <  AE015451/3593013‑3592783                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGCGCCACCTGTCCCCTCGGGTACGCGGCTTCATCGACTTGTTGGTGGCCACCTGGGAGCCAGGCGTGCCTTGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGGCCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGCTCTGCGA                                                                                                                                                                                                                                            >  2:145326/1‑224                                                                                                                                                                               GGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGTCTTGCCTTCGCCGATCATGACCAGATCCAGTACGGACAGTGCAGTCATGGGGGCTCCAGAGGGGTCATCAGTGGCTGCCAGTTGCCATGCTGCGCCc                                                                                                                                       >  2:734003/1‑150                                                                                                                                                                                                  TGTCCGTACTGGATCTGGTCATGATCGGCGAAGGTCTTGCCTTCGCCGATCATGACCAGATCCAGTACGGACAGTGCAGTCATGGGGTCTCCAGAGGGATTATCAGTGGCT                                                                                                                                                            >  1:547782/1‑111                                                                                                                                                                                                  TGTCCGTACTGGATCTGGTCATGATCGGCGAAGGTCTTGCCTTCGCCGATCATGACCAGATCCAGTACGGACAGTGCAGTCATGGGGTCTCCAGAGGGATTATCAGTGGCT                                                                                                                                                            <  2:547781/111‑1                                                                                                                                                                                                                 TGGTCATGATCGGCGAAGGTCTTGCCTTCGCCGATCATGACCAGATCCAGTACGGACAGTGCAGTCATGGGGTCTCCAGAGGGATTATTAGTGGCTGCCAGTTTCCATGCTGCGCCGCCAGCGATAAACCCAATTTCAGGCCCGGCA                                                                                                         >  2:749887/1‑147                                                                                                                                                                                                                          TCGGCGAAGGTCTTGCCTTCGCCGATCATGACCAGATCCAGTACGGACAGTGCAGT                                                                                                                                                                                           <  1:576205/56‑1                                                                                                                                                                                                                                AAGGTCTTGCCTTCGCCGATCATGACCAGATCCAGTACGGACAGTGCAGTCATGGGGTCTCCAGAGGGATTATCAGTGGCTGCCAGTTTCCATGCTGCGCCGCCAGCGATAAACCCAATTTCAGGCCCGGCATAGGGGCCTGGCATTCCCCAATCAGTATTCCCAAGGCACGCCTGGCTCCCAGGTGGCCACCAACAAGTCGATGAAGCCGCGTACCCGAGGGGACAGGTGGCGC  <  1:691245/235‑1                                                                                                                                                                                                                                  GGTCTTGCCTTCGCGGATCATGACCAGATCCAGTACGGACAGTGCAGTCATGGGGTCTCCAGAGGGATTATCAGTGGCTGCCAGTTTCCATGCTGCGCCGCCAGCGATAAACCCAATTTCAGGCCCGGCATAGGGGCCTGGCATTCCCCAATCAGTATTCCCAAGGCACGCCTGGCTCCCAGGTGGCCACCAACAAGTCGATGAAGCC                           <  1:337456/208‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGCGCCACCTGTCCCCTCGGGTACGCGGCTTCATCGACTTGTTGGTGGCCACCTGGGAGCCAGGCGTGCCTTGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3592782‑3593008 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgaaggTCTTGCCTTCGCCGATCATGACCAGATCCAGTACGGACAGTGCAGTCATGGGGTCTCCAGAGGGATTATCAGTGGCTGCCAGTTTCCATGCTGCGCCGCCAGCGATAAACCCAATTTCAGGCCCGGCATAGGGGCCTGGCATTCCCCAATCAGTATTCCCAAGGCACGCCTGGCTCCCAGGTGGCCACCAACAAGTCGATGAAGCCGCGTACCCGAGGGGACAGGTGGCGC  <  AE015451/3593013‑3592783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.