New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3593008	25 (0.630)	4 (0.110)	4/316	NT	14.7%	coding (44/981 nt)	PP_3171	conserved protein of unknown function
	?	AE015451	= 3593013	23 (0.610)					coding (49/981 nt)	PP_3171	conserved protein of unknown function

GCGCCACCTGTCCCCTCGGGTACGCGGCTTCATCGACTTGTTGGTGGCCACCTGGGAGCCAGGCGTGCCTTGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCTGGTGATCAACGAAATCGCCAACGCCACCCGACACATTCGTGTGGGTGCTGGCGGTATCATGCTGCCCAACCATGCGCCGTTGGTGGTGGCCGAACAGTTTGG  >  AE015451/3592783‑3593239                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                        gcgcCACCTGTCCCCTCGGGTACGCGGCTTCATCGACTTGTTGGTGGCCACCTGGGAGCCAGGCGTGCCTTGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGAcctt                                                                                                                                                                                                                                <  1:691245‑M2/235‑5 (MQ=255)                          ggCTTCATCGACTTGTTGGTGGCCACCTGGGAGCCAGGCGTGCCTTGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCCGCGAAGGCAAGAcc                                                                                                                                                                                                                                  <  1:337456‑M2/208‑3 (MQ=255)                                                 cACCTGGGAGCCAGGCGTGCCTTGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCaa                                                                                                                                                                               <  1:145326/236‑1 (MQ=255)                                                  aCCTGGGAGCCAGGCGTGCCTTGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGc                                                                                                                                                                                          >  1:203530/1‑224 (MQ=255)                                                           ccAGGCGTGCCTTGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTAc                                                                                                                                                                      <  1:710002/235‑1 (MQ=255)                                                               gCGTGCCTTGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTc                                                                                                                                                                                     <  1:127155/216‑1 (MQ=255)                                                                      ttGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAg                                                                                                                                                                                                                                     <  2:661920/161‑1 (MQ=255)                                                                      ttGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAg                                                                                                                                                                                                                                     >  1:661921/1‑161 (MQ=255)                                                                          gAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCg                                                                                                                                                      <  1:192738/236‑1 (MQ=255)                                                                                tGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGCCGa                                                                                                                                                                                   >  1:472399/1‑201 (MQ=255)                                                                                 gATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCa                                                                                                                                               >  1:715508/1‑236 (MQ=255)                                                                                     ggggAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGAcg                                                                                                                                                                                                                        <  2:669240/159‑1 (MQ=255)                                                                                     ggggAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGAcg                                                                                                                                                                                                                        >  1:669241/1‑159 (MQ=255)                                                                                        gAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCCTGACTGCCCTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGAcgcg                                                                                                                                                                                                                      >  2:40137/1‑158 (MQ=255)                                                                                          cggCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACt                                                                                                                                                                        <  1:151571/200‑1 (MQ=255)                                                                                                   cccTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCAt                                                                                                                             >  1:700818/1‑236 (MQ=255)                                                                                                        tGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTAATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGAccttcgccgatcatgacca                                                                                                                                                                                                                 >  2:749887‑M2/1‑128 (MQ=255)                                                                                                                                      gggcgcAGCATGGCAACTGGCAGCCACTGATGACCCCTCTGGAGCCCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGAccttcgccgatcatgaccagatccagtacggacagtgcagtcatggggtctcc                                                                                                                                                                               >  2:734003‑M2/2‑98 (MQ=255)                                                                                                                                                      cTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCTGGTGATCAACGAAATCGCCAACGCCAcc                                                                            <  2:455282/234‑1 (MQ=255)                                                                                                                                                           aGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGAccttcgccgatcatgaccagatccagtacggaca                                                                                                                                                                                                  <  2:547781‑M2/111‑35 (MQ=255)                                                                                                                                                           aGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGAccttcgccgatcatgaccagatccagtacggaca                                                                                                                                                                                                  >  1:547782‑M2/1‑77 (MQ=255)                                                                                                                                                                      aTCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCTGGTGATCAACGAAATCGCCAACGCCACCCGACACATTCGTGTgg                                                            <  2:700817/234‑1 (MQ=255)                                                                                                                                                                              ggAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGtcttgccttcgccgatcatgaccagatccagtacggacagtgcagtcatgggggctccagaggggtcatcagtggctgccagttgccatgctgcgccc                                                                                                                                       >  2:734003‑M1/1‑53 (MQ=255)                                                                                                                                                                                agaCCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCTGGTGATCAACGAAATCGCCAACGCCACCCGACACATTCGTGTGGGTGCTGGCgg                                                  >  2:494267/1‑234 (MQ=255)                                                                                                                                                                                  aCCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCTGGTGATCAACGAAATCGCTAACGCCACCCGACACATTCGTGTGGGTGCTGGCGGTAt                                               >  1:748520/1‑235 (MQ=255)                                                                                                                                                                                     ccATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGCGCAACAGCACTACAGCCGCTACTGGATCGCCGa                                                                                                                                                  >  2:712576/1‑133 (MQ=255)                                                                                                                                                                                          aCTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGAccttcgccga                                                                                                                                                                                                                          <  1:576205‑M2/56‑11 (MQ=255)                                                                                                                                                                                                 tGTCCGTACTGGATCTGGTCATGATCGGCGAAGGtcttgccttcgccgatcatgaccagatccagtacggacagtgcagtcatggggtctccagagggattatcagtggct                                                                                                                                                            >  1:547782‑M1/1‑34 (MQ=255)                                                                                                                                                                                                 tGTCCGTACTGGATCTGGTCATGATCGGCGAAGGtcttgccttcgccgatcatgaccagatccagtacggacagtgcagtcatggggtctccagagggattatcagtggct                                                                                                                                                            <  2:547781‑M1/111‑78 (MQ=255)                                                                                                                                                                                                      gTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCCCGTCGCTGGTGAt                                                                                                  >  1:150500/1‑164 (MQ=255)                                                                                                                                                                                                      gTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCTGGTGATCAACGAAATCGCCAACGCCACCCGa                                                                         >  2:676291/1‑189 (MQ=255)                                                                                                                                                                                                        aCTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCTGGTGATCAACGAAATCGCCAACGCCACCCGACACATTCGTGTGGGTGCTGGCgg                                                  >  1:108960/1‑210 (MQ=255)                                                                                                                                                                                                                tGGTCATGATCGGCGAAGGtcttgccttcgccgatcatgaccagatccagtacggacagtgcagtcatggggtctccagagggattattagtggctgccagtttccatgctgcgccgccagcgataaacccaatttcaggcccggca                                                                                                         >  2:749887‑M1/1‑19 (MQ=255)                                                                                                                                                                                                                tGGTCATGATCGGCGAAGGTCTTGCCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCTGGTGATCAACGAAATCGCCAACGCCAccc                                                                           >  1:474107/1‑177 (MQ=255)                                                                                                                                                                                                                tGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCGGGTGATCAACGAAATCGCCAACGCCACCCGACACATTCg                                                                 >  1:218415/1‑187 (MQ=255)                                                                                                                                                                                                                    cATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCTGGTGATCAACGAAATCGc                                                                                      >  2:630210/1‑162 (MQ=255)                                                                                                                                                                                                                     aTGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCAGTGGCTCGGCTGCCACGTCGCTGGGGAGCAACGAAAgcgc                                                                                      >  1:176816/1‑161 (MQ=255)                                                                                                                                                                                                                         tCGGCGAAGGtcttgccttcgccgatcatgaccagatccagtacggacagtgcagt                                                                                                                                                                                           <  1:576205‑M1/56‑47 (MQ=255)                                                                                                                                                                                                                            gCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCTGGTGATCAACGAAATCGCCAACGCCACCCGACACATTCGTGTGGGTGCTGGCGGTATCATGCTGCCCAACCATGCGCCGTTGGTGGTGGCCGAACAGttt    <  1:494268/236‑1 (MQ=255)                                                                                                                                                                                                                               aaGGtcttgccttcgccgatcatgaccagatccagtacggacagtgcagtcatggggtctccagagggattatcagtggctgccagtttccatgctgcgccgccagcgataaacccaatttcaggcccggcataggggcctggcattccccaatcagtattcccaaggcacgcctggctcccaggtggccaccaacaagtcgatgaagccgcgtacccgaggggacaggtggcgc  <  1:691245‑M1/235‑232 (MQ=255)                                                                                                                                                                                                                               aaGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCTGGTGATCAACGAAATCGCCAACg                                                                                 >  2:593890/1‑156 (MQ=255)                                                                                                                                                                                                                                 ggtcttgccttcgcggatcatgaccagatccagtacggacagtgcagtcatggggtctccagagggattatcagtggctgccagtttccatgctgcgccgccagcgataaacccaatttcaggcccggcataggggcctggcattccccaatcagtattcccaaggcacgcctggctcccaggtggccaccaacaagtcgatgaagcc                           <  1:337456‑M1/208‑207 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                        GCGCCACCTGTCCCCTCGGGTACGCGGCTTCATCGACTTGTTGGTGGCCACCTGGGAGCCAGGCGTGCCTTGGGAATACTGATTGGGGAATGCCAGGCCCCTATGCCGGGCCTGAAATTGGGTTTATCGCTGGCGGCGCAGCATGGAAACTGGCAGCCACTGATAATCCCTCTGGAGACCCCATGACTGCACTGTCCGTACTGGATCTGGTCATGATCGGCGAAGGCAAGACCTTCGCCGACGCGATCGAAGAATCCCGCCAGCTGGCGCGGCATGTCGAGCAACAGCACTACAGCCGCTACTGGATCGCCGAGCACCATGACATGCCGGGCATTGGCTCGGCTGCCACGTCGCTGGTGATCAACGAAATCGCCAACGCCACCCGACACATTCGTGTGGGTGCTGGCGGTATCATGCTGCCCAACCATGCGCCGTTGGTGGTGGCCGAACAGTTTGG  >  AE015451/3592783‑3593239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.