New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4094253	26 (0.650)	3 (0.080)	3/326	NT	10.5%	coding (1250/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase
	?	AE015451	= 4094261	26 (0.670)					coding (1258/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase

CGTCGGCGGCCTTGAACACTTGCATGCCCATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4094032‑4094253 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggTCAGCTGGCCGCGCAGGCCGAGCAGCGCGTCGCGCAGTTGGTCGTTGTCCTGCACCTCTACGGCCACGGTGGTGGGCCCAAACACTTCTTCCTGCAACAGCGGGTCGGACTCGACCAGCAGGCGTGCATCGGCCTTGAACAGCTGAGCGCGCGCCTGGTTGCCTTCCTGCACCT  <  AE015451/4094261‑4094088                                                                                                                                                                                                                                                                                                                                                                                                              CGTCGGCGGCCTTGAACACTTGCATGCCCATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGCAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGCGCAGGACAAAGACCAACTTCGCGACGCGCTGCTCGGCCCGCGCG                                                                                                                                                                                 >  1:333195/1‑221                                                                                                                                                      TTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGTCAGCTGGCCGCGCAGGCCGAGCAGCGCGTCGCGCAGTTGGTCGTTGTCCTGCACCTCTACGGCCACGGT                                                                                                          >  2:352434/1‑143                                                                                                                                                                  CCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCCCGGCCTGCG                                                                                                                                                                                   >  2:119162/1‑58                                                                                                                                                                     TGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGTCAGCTGGCCGCGCAGGCCGAGCAGCGCGTCGCGCAGTTGGTCGTTGTCCTGCACCTCTACGGCCACGGTGGTGGGCCCAAACACTTCTTCCTGCAACAGCGGGTCGGACTCGAC                                                             <  1:352435/173‑1                                                                                                                                                                                           CGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGTCAGCTGGCCGCGCAGGCCGAGCAGCGCGTCGCGCAGTTGGTCGTTGTCCTGCACCTCTACGGCCACGGTGGTGGGCCCAAACACTTC                                                                                        >  2:625539/1‑124                                                                                                                                                                                                                           GCGGTCAGCTGGCCGCGCAGGCCGAGCAGCGCGTCGCGCAGTTGGTCGTTGTCCTGCACCTCTACGGCCACGGTGGTGGGCCCAAACACTTCTTCCTGCAACAGCGGGTCGGACTCGACCAGCAGGCGTGCATCGGCCTTGAACAGCTGAGCGCGCGCCTGGTTGCCTTCCTGCACCT  <  1:544710/178‑1                                                                                                                                                                                                                                                                                                                                                                                                              CGTCGGCGGCCTTGAACACTTGCATGCCCATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4094032‑4094253 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggTCAGCTGGCCGCGCAGGCCGAGCAGCGCGTCGCGCAGTTGGTCGTTGTCCTGCACCTCTACGGCCACGGTGGTGGGCCCAAACACTTCTTCCTGCAACAGCGGGTCGGACTCGACCAGCAGGCGTGCATCGGCCTTGAACAGCTGAGCGCGCGCCTGGTTGCCTTCCTGCACCT  <  AE015451/4094261‑4094088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.