New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4094253	26 (0.650)	3 (0.080)	3/326	NT	10.5%	coding (1250/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase
	?	AE015451	= 4094261	26 (0.670)					coding (1258/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase

ACTTGCATGCCCATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCTCGGTCGGCACTTTGGCCATCGACCGCTTCCTGCGCCCGGTGTGCTACCAGAA  >  AE015451/4094049‑4094487                                                                                                                                                                                                             |                                                                                                                                                                                                                                           acTTGCATGCCCATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCg                                                                                                                                                                                                             >  1:732586/1‑236 (MQ=255)      catgcccatgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCggagga                                                                                                                                                                                                        >  1:432444/1‑236 (MQ=255)              tgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGa                                                                                                                                                                                                                                    <  2:688371/200‑1 (MQ=255)              tgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGa                                                                                                                                                                                                                                    >  1:688372/1‑200 (MQ=255)                ccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCCGCTGACCGCGACGCTGAGCGGc                                                                                                                                                                                                                   >  2:219802/1‑215 (MQ=255)                      tCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGc                                                                                                                                                                                         >  1:671695/1‑235 (MQ=255)                            aTGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGGACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAg                                                                                                                                                                                                                                        >  1:412851/1‑182 (MQ=255)                                        aGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGAccgc                                                                                                                                                                                                                                <  1:544710‑M2/178‑5 (MQ=255)                                                gAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGaa                                                                                                                                                              <  1:647131/236‑1 (MQ=255)                                                      aaCCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCg                                                                                                                                                         <  1:445685/235‑1 (MQ=255)                                                        ccAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCACCTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGCCGCTGATCGGCgcc                                                                                                                                                                                                                >  2:24929/1‑176 (MQ=255)                                                        ccAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGc                                                                                                                                                      >  1:583903/1‑236 (MQ=255)                                                                                             ctgctgGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGt                                                                                                                 <  1:513004/236‑1 (MQ=255)                                                                                                   gTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGAccgcgcaggccgagcagcgcgtcgcgcagttggtcgttgtcctgcacctctacggcca                                                                                                                                                                          <  1:352435‑M2/173‑59 (MQ=255)                                                                                                     cGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGc                                                                                                                                                                                         >  2:509394/1‑156 (MQ=255)                                                                                                          ccGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCa                                                                                                                                                                                                                                         <  2:554502/103‑1 (MQ=255)                                                                                                                              gaagTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGAccgcgcaggccgagcagcgcgtcgcgcagttggtcg                                                                                                                                                                                                >  2:625539‑M2/1‑88 (MQ=255)                                                                                                                                     ttGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGtcagctggccgcgcaggccgagcagcgcgtcgcgcagttggtcgttgtcctgcacctctacggccacggt                                                                                                                                                                      >  2:352434‑M1/1‑73 (MQ=255)                                                                                                                                     ttGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCa                                                                                               <  1:473835/214‑1 (MQ=255)                                                                                                                                          cccACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCtgt                                                                                                             <  1:685667/195‑1 (MQ=255)                                                                                                                                          cccACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCtgt                                                                                                             >  2:685666/1‑195 (MQ=255)                                                                                                                                              ccaccGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTcc                                                                      <  1:289934/230‑1 (MQ=255)                                                                                                                                                accGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGAccgcgcaggccgagcagcgcgtcgcgcagttggtcgttgtcctgcacctctacggccacggtggtgggcccaa                                                                                                                                                           >  2:352434‑M2/1‑70 (MQ=255)                                                                                                                                                 ccGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGAt                                                                                                                                                                                                 >  2:185361/1‑104 (MQ=255)                                                                                                                                                 ccGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGt                                                             >  1:579889/1‑236 (MQ=255)                                                                                                                                                    tGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGtcagctggccgcgcaggccgagcagcgcgtcgcgcagttggtcgttgtcctgcacctctacggccacggtggtgggcccaaacacttcttcctgcaacagcgggtcggactcgac                                                                                                                         <  1:352435‑M1/173‑116 (MQ=255)                                                                                                                                                          tAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGGGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCtcg                                                    >  1:111589/1‑236 (MQ=255)                                                                                                                                                              ggTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCtgtg                                                                                                            >  1:254088/1‑176 (MQ=255)                                                                                                                                                                  cAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGAt                                                                                                                                                                                                 >  2:286067/1‑87 (MQ=255)                                                                                                                                                                  cAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGAt                                                                                                                                                                                                 <  1:286068/87‑1 (MQ=255)                                                                                                                                                                        aaCGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCTCGGTCGGCACTTTGGc                                      >  1:507106/1‑236 (MQ=255)                                                                                                                                                                          cGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGtcagctggccgcgcaggccgagcagcgcgtcgcgcagttggtcgttgtcctgcacctctacggccacggtggtgggcccaaacacttc                                                                                                                                                    >  2:625539‑M1/1‑36 (MQ=255)                                                                                                                                                                            aCCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCTCGGTCGGCACTTTGGCCAt                                   >  1:441108/1‑235 (MQ=255)                                                                                                                                                                                     gcgACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGa                                                                                                                                                    <  2:421744/113‑1 (MQ=255)                                                                                                                                                                                         cgcgCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCtcggtc                                                 >  2:739068/1‑208 (MQ=255)                                                                                                                                                                                                          gcgGtcagctggccgcgcaggccgagcagcgcgtcgcgcagttggtcgttgtcctgcacctctacggccacggtggtgggcccaaacacttcttcctgcaacagcgggtcggactcgaccagcaggcgtgcatcggccttgaacagctgagcgcgcgcctggttgccttcctgcacct                                                              <  1:544710‑M1/178‑175 (MQ=255)                                                                                                                                                                                                             gCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCTCGGTCGGCa                                             >  1:373118/1‑192 (MQ=255)                                                                                                                                                                                                             gCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCTCGCTCGGCACTTTGGCCATCGACCGCTTCCTGCGCCCGGTGTGCTACCAGaa  >  1:465703/1‑235 (MQ=255)                                                                                                                                                                                                             |                                                                                                                                                                                                                                           ACTTGCATGCCCATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCTCGGTCGGCACTTTGGCCATCGACCGCTTCCTGCGCCCGGTGTGCTACCAGAA  >  AE015451/4094049‑4094487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.