New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 4094253 | 26 (0.650) | 3 (0.080) | 3/326 | NT | 10.5% | coding (1250/1581 nt) | PP_3602 | 2,5‑dioxovalerate dehydrogenase |
? | AE015451 | = 4094261 | 26 (0.670) | coding (1258/1581 nt) | PP_3602 | 2,5‑dioxovalerate dehydrogenase |
ACTTGCATGCCCATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCTCGGTCGGCACTTTGGCCATCGACCGCTTCCTGCGCCCGGTGTGCTACCAGAA > AE015451/4094049‑4094487 | acTTGCATGCCCATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCg > 1:732586/1‑236 (MQ=255) catgcccatgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCggagga > 1:432444/1‑236 (MQ=255) tgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGa < 2:688371/200‑1 (MQ=255) tgccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGa > 1:688372/1‑200 (MQ=255) ccGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCCGCTGACCGCGACGCTGAGCGGc > 2:219802/1‑215 (MQ=255) tCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGc > 1:671695/1‑235 (MQ=255) aGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGAccgc < 1:544710‑M2/178‑5 (MQ=255) gAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGaa < 1:647131/236‑1 (MQ=255) aaCCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCg < 1:445685/235‑1 (MQ=255) ccAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCACCTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGCCGCTGATCGGCgcc > 2:24929/1‑176 (MQ=255) ccAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGc > 1:583903/1‑236 (MQ=255) ctgctgGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGt < 1:513004/236‑1 (MQ=255) gTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGAccgcgcaggccgagcagcgcgtcgcgcagttggtcgttgtcctgcacctctacggcca < 1:352435‑M2/173‑59 (MQ=255) cGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGc > 2:509394/1‑156 (MQ=255) gaagTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGAccgcgcaggccgagcagcgcgtcgcgcagttggtcg > 2:625539‑M2/1‑88 (MQ=255) ttGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCa < 1:473835/214‑1 (MQ=255) cccACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCtgt < 1:685667/195‑1 (MQ=255) cccACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCtgt > 2:685666/1‑195 (MQ=255) ccaccGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTcc < 1:289934/230‑1 (MQ=255) accGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGAccgcgcaggccgagcagcgcgtcgcgcagttggtcgttgtcctgcacctctacggccacggtggtgggcccaa > 2:352434‑M2/1‑70 (MQ=255) ccGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGAt > 2:185361/1‑104 (MQ=255) ccGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGt > 1:579889/1‑236 (MQ=255) tAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGGGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCtcg > 1:111589/1‑236 (MQ=255) ggTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCtgtg > 1:254088/1‑176 (MQ=255) cAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGAt > 2:286067/1‑87 (MQ=255) cAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGAt < 1:286068/87‑1 (MQ=255) aaCGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCTCGGTCGGCACTTTGGc > 1:507106/1‑236 (MQ=255) aCCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCTCGGTCGGCACTTTGGCCAt > 1:441108/1‑235 (MQ=255) gcgACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGa < 2:421744/113‑1 (MQ=255) cgcgCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCtcggtc > 2:739068/1‑208 (MQ=255) gCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCTCGGTCGGCa > 1:373118/1‑192 (MQ=255) gCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCTCGCTCGGCACTTTGGCCATCGACCGCTTCCTGCGCCCGGTGTGCTACCAGaa > 1:465703/1‑235 (MQ=255) | ACTTGCATGCCCATGCCGGTATCGAGCATGTGGCCGGCCAGGTGCAGGAAGGCAACCAGGCGCGCGCTCAGCTGTTCAAGGCCGATGCACGCCTGCTGGTCGAGTCCGACCCGCTGTTGCAGGAAGAAGTGTTTGGGCCCACCACCGTGGCCGTAGAGGTGCAGGACAACGACCAACTGCGCGACGCGCTGCTCGGCCTGCGCGGCCAGCTGACCGCGACGCTGATCGGCGAAGCGGAGGACTTCGATGCCTTCGCCTGGCTGGTGCCGCTGCTGGAGGAGAAAGTCGGGCGAATCCTGGTCAATGGCTACCCGACCGGTGTCGAAGTCTGTGATGCCATGGTGCACGGCGGCCCGTACCCGGCGACCTCCGATGCGCGTGGCACCTCGGTCGGCACTTTGGCCATCGACCGCTTCCTGCGCCCGGTGTGCTACCAGAA > AE015451/4094049‑4094487 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |