New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5433680	24 (0.600)	3 (0.080)	3/320	NT	10.2%	coding (1584/2529 nt)	hrpB	ATP‑dependent helicase HrpB
	?	AE015451	= 5433711	30 (0.790)					coding (1553/2529 nt)	hrpB	ATP‑dependent helicase HrpB

TCACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5433543‑5433680 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggcgCCCTGCTGGCGCTGGCCTACCCTGACCGGGTCGCCCAGCAGCGCCGGGCGGGTGGGGCGGAGTATCGGCTGGCCAACGGCCGTGCGGCCCTGTTTGGCGAAGTCGATGCATTGATGAAGTGCCCATGGCTGGTGATCGCCGACCTGGGTAGCCGCCAGGGGCAGCGTGAGGAGCGGATCTATCTGGCAGCCGAATTCGATCCGGCGTTGCTTGAGGGGGTACTGGCCGA  <  AE015451/5433711‑5433483                                                                                                                                                                                                                                                                                                                                                                                 TCACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACCTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCCCGGCGCCCCGCT                                                                                                                                                                                                                                >  2:75821/1‑145                                                                                    CGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGC                                                                                                                                                                                                                                        <  1:595638/54‑1                                                                                    CGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGC                                                                                                                                                                                                                                        >  2:595637/1‑54                                                                                         GGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGCCCTGCTGGCGCTGGCCTACCCTGACCGGGT                                                                                                                                                                                                        >  1:486814/1‑81                                                                                         GGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGCCCTGCTGGCGCTGGCCTACCCTGACCGGGT                                                                                                                                                                                                        <  2:486813/81‑1                                                                                                                                     TGGGCGCCCTGCTGGCGCTGGCCTACCCTGACCGGGTCGCCCAGCAGCGCCGGGCGGGTGGGGCGGAGTATCGGCTGGCCAACGGCCGTGCGGCCCTGTTTGGCGAAGTCGATGCATTGATGAAGTGCCCATGGCTGGTGATCGCCGACCTGGGTAGCCGCCAGGGGCAGCGTGAGGAGCGGATCTATCTGGCAGCCGAATTCGATCCGGCGTTGCTTGAGGGGGTACTGGCCGA  >  1:50622/1‑235                                                                                                                                                                                                                                                                                                                                                                                 TCACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5433543‑5433680 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggcgCCCTGCTGGCGCTGGCCTACCCTGACCGGGTCGCCCAGCAGCGCCGGGCGGGTGGGGCGGAGTATCGGCTGGCCAACGGCCGTGCGGCCCTGTTTGGCGAAGTCGATGCATTGATGAAGTGCCCATGGCTGGTGATCGCCGACCTGGGTAGCCGCCAGGGGCAGCGTGAGGAGCGGATCTATCTGGCAGCCGAATTCGATCCGGCGTTGCTTGAGGGGGTACTGGCCGA  <  AE015451/5433711‑5433483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.