New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5433680	24 (0.600)	3 (0.080)	3/320	NT	10.2%	coding (1584/2529 nt)	hrpB	ATP‑dependent helicase HrpB
	?	AE015451	= 5433711	30 (0.790)					coding (1553/2529 nt)	hrpB	ATP‑dependent helicase HrpB

GTCCCAATCGAGGATATCGACCCGCTCGACCTGCTCGGCCAGTACCCCCTCAAGCAACGCCGGATCGAATTCGGCTGCCAGATAGATCCGCTCCTCACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGCACGCTGCACACCACCCTGGCCGCCACGCGCTGCCTTGCTCTCACCGCTGACCAGCGCAAGCCGGCTGTGCAAGTCGGCACCACCGCCACGCTGGATGTCCCGCTCCC  >  AE015451/5433449‑5433909                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                      gTCCCAATCGAGGATATCGACCCGCTCGACCTGCTCGGCCAGTACCCCCTCAAGCAACGCCGGATCGAATTCGGCTGCCAGATAGATCCGCTCCTCACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGAccc                                                                                                                                                                                                                                   <  1:448070/236‑1 (MQ=255)                                   tCGGCCAGTACCCCCTCAAGCAACGCCGGATCGAATTCGGCTGCCAGATAGATCCGCTCCTCACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGcgccca                                                                                                                                                                                                  >  1:50622‑M2/1‑229 (MQ=255)                                              ccccTCAAGCAACGCCGGATCGAATTCGGCTGCCAGATAGATCCGCTCCTCACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGgccagcg                                                                                                                                                                                                                 <  1:720658/209‑1 (MQ=255)                                              ccccTCAAGCAACGCCGGATCGAATTCGGCTGCCAGATAGATCCGCTCCTCACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCgtgggt                                                                                                                                                                                      <  1:27077/236‑1 (MQ=255)                                               cccTCAAGCAACGCCGGATCGAATTCGGCTGCCAGATAGATCCGCTCCTCACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCccagcca                                                                                                                                                                                              >  2:639529/1‑227 (MQ=255)                                                                                           ctcctcACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAcgccagcgccag                                                                                                                                                                                                             >  2:378895/1‑168 (MQ=255)                                                                                              ctcACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGACCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCccgcag                                                                                                                                                                                                          >  2:305727/1‑168 (MQ=255)                                                                                               tcACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACCTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCCCGGCGccccgct                                                                                                                                                                                                                                >  2:75821‑M1/1‑138 (MQ=255)                                                                                                                     ccAGGTCGGCGACCACCAGCCATGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGa                                                                                                               <  1:554040/236‑1 (MQ=255)                                                                                                                         gTCGGCGATCACCAGCCAGGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGCAc                                                                                                           <  1:517221/236‑1 (MQ=255)                                                                                                                            ggCGATCACCAGCCATGGGCACTTCATCAATGCATCGACTGCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCCCCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGc                                                                                                             <  1:110512/231‑1 (MQ=255)                                                                                                                                         cctGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCa                                                                                                                       <  2:296778/206‑1 (MQ=255)                                                                                                                                                     atcaATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACg                                                                                                                                                 <  2:611086/170‑1 (MQ=255)                                                                                                                                                     atcaATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACg                                                                                                                                                 >  1:611087/1‑170 (MQ=255)                                                                                                                                                        aaTGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGCAc                                                                                                           <  1:485502/205‑1 (MQ=255)                                                                                                                                                               cGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGCACGCTGCACACCACCCTGGCCGCCACGCGCTGCCTTGct                                                                      >  1:393003/1‑235 (MQ=255)                                                                                                                                                                  cTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGCACGCTGCACACCACCCTGgccgc                                                                                      >  1:186028/1‑216 (MQ=255)                                                                                                                                                                    tCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCCGCGCCAGCAGGGCGCCCAGCCAGCGCGGCGGGTCCgg                                                                                                                                                                               >  2:108008/1‑125 (MQ=255)                                                                                                                                                                    tCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGCACGCTGCACACCAccc                                                                                             >  1:23053/1‑207 (MQ=255)                                                                                                                                                                      gCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGCACGCTGCACACCACCCTGGCCGCCACGCGCTGCCTTGCTCTCa                                                                  <  1:137292/232‑1 (MQ=255)                                                                                                                                                                                  cGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGa                                                                                                               <  1:520379/175‑1 (MQ=255)                                                                                                                                                                                  cGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGCACGCTGCACACCACCCTGGCCGCCACGCGCTGCCTTGc                                                                       <  2:262540/215‑1 (MQ=255)                                                                                                                                                                                  cGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGCACGCTGCACACCACCCTGGCCGCCACGCGCTGCCTTGc                                                                       >  1:262541/1‑215 (MQ=255)                                                                                                                                                                                  cGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCCGCTGGGCGACCCGGCCa                                                                                                                                                                                                                              >  2:117307/1‑64 (MQ=255)                                                                                                                                                                                       ggCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGccctgctggcgctggcctaccctgaccgggt                                                                                                                                                                                                        <  2:486813‑M1/81‑32 (MQ=255)                                                                                                                                                                                       ggCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGccctgctggcgctggcctaccctgaccgggt                                                                                                                                                                                                        >  1:486814‑M1/1‑50 (MQ=255)                                                                                                                                                                                       ggCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGGGGTCCGGGTCGGCGACCGGCGCACCGAc                                                                                                                                                          >  2:253499/1‑127 (MQ=255)                                                                                                                                                                                               gCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGCACGCTGCACACCACCCTGGCCGCCACGCGCTGCCTTGCTCTCACCGCTGACCAGCGCAAGCCGGCTGTGCaa                                     <  1:639530/236‑1 (MQ=255)                                                                                                                                                                                                          cTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGCACGCTGCACACCACCCTGGCCGCCACGCGCTGCCTTGCTCTCACCGCTGACCAGCGCAAGc                                                <  1:501991/214‑1 (MQ=255)                                                                                                                                                                                                                                   tgGGCGccctgctggcgctggcctaccctgaccgggtcgcccagcagcgccgggcgggtggggcggagtatcggctggccaacggccgtgcggccctgtttggcgaagtcgatgcattgatgaagtgcccatggctggtgatcgccgacctgggtagccgccaggggcagcgtgaggagcggatctatctggcagccgaattcgatccggcgttgcttgagggggtactggccga  >  1:50622‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                      GTCCCAATCGAGGATATCGACCCGCTCGACCTGCTCGGCCAGTACCCCCTCAAGCAACGCCGGATCGAATTCGGCTGCCAGATAGATCCGCTCCTCACGCTGCCCCTGGCGGCTACCCAGGTCGGCGATCACCAGCCATGGGCACTTCATCAATGCATCGACTTCGCCAAACAGGGCCGCACGGCCGTTGGCCAGCCGATACTCCGCCCCACCCGCCCGGCGCTGCTGGGCGACCCGGTCAGGGTAGGCCAGCGCCAGCAGGGCGCCCAGCCAGCGTGGGTGGTCCGGGTCGGCGACCGGCGCACCGACCTTGCCACGCAACAGGCCACGGTATTGCCGGGCCAGCTGACGAGCACGCTGCACACCACCCTGGCCGCCACGCGCTGCCTTGCTCTCACCGCTGACCAGCGCAAGCCGGCTGTGCAAGTCGGCACCACCGCCACGCTGGATGTCCCGCTCCC  >  AE015451/5433449‑5433909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.