New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5956204	25 (0.630)	3 (0.080)	3/318	NT	10.6%	coding (263/489 nt)	PP_5221	conserved protein of unknown function, UPF0178 family
	?	AE015451	= 5956270	27 (0.710)					coding (197/489 nt)	PP_5221	conserved protein of unknown function, UPF0178 family

TACAGGAATCTGTCAGCCTTTCGAGAGCCGGGCAATGATCCGGTCCAGTGCATTGGCAAACGCCTGTTTCTCACGTTCGCCATAGGCCGCCTGCCCGCCCCCCACCTGGCCCTGCTCACGCAGCTCGGTGAACAGGTTGCGCGCCGCCAGGCGGTCGCCCATGTTGCGCTCGTCGAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5955966‑5956204 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcggcaTGGATGCGGCCGACGACTACATTGTGGAGCACGCCGTGCCGGGCGAGCTGGTGATCTGCAGTGACGTGCCGCTGGCCGACCGCCTGGTGAAAAAGGGCGTGGCCGCGCTGGACCCGCGTGGGCGCGAGTTCGACGAGCGCAACATGGGCGACCGCCTGGCGGCG  <  AE015451/5956270‑5956107                                                                                                                                                                                                                                                                                                                                                                                                                     TACAGGAATCTGTCAGCCTTTCGAGAGCCGGGCAATGATCCGGTCCAGTGCATTGGCAAACGCCTGTTTCTCACGTTCGCCATAGGCCGCCTGCCCGCCCCCCACCTGGCCCTGCTCACGCAGCTCGGTGAACAGGTTGCGCGCCGCCAGGCGGTCGCCCATGTTGCGCTCGTCGAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAG                                                                                                                                                                           <  2:382442/234‑1                                                                                    AGGCCGCCTGCCCGCCCCCCACCTGGCCCTGCTCACGCAGCTCGGTGAACAGGTTGCGCGCCGCCAGGCGGTCGCCCATGTTGCGCTCGTCGAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCATGGATGCGGCCGACGACTACATTGTGGAGCACGCCGTGCCGGGCGAGCTGGT                                                                                                                  <  2:143307/208‑1                                                                                                                                                                                                        GCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCGTGGATGCGGCCGGCGACTACATTGTGGAGCACGCCGTGCCGGGCGAGCTGGgg                                                                                                                 >  1:299270/1‑91                                                                                                                                                                                                               CGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCATGGATGCGGCCGACGACTACATTGTGGAGCACGCCGTGCCGGGCGAGCTGGTGATCTGCAGTGACGTGCCGCTGGCCGACCGCCTGGTGAAAATGGGCGTGGCCGCGCTGGACCCGCGTGGGCGCGAGTTCGACGAGCGCAACATGGGCGACCGCCTGGCGG    >  1:465388/1‑195                                                                                                                                                                                                                                             GCATGGATGCGGCCGACGACTACATTGTGGAGCACGCCGTGCCGGGCGAGCTGGTGATCTGCAGTGACGTGCCGCTGGCCGACCGCCTGGTGAAAAAGGGCGTGGCCGCGCTGGACCCGCGTGGGCGCGAGTTCGACGAGCGCAACATGGGCGACCGCCTGGCGGCG  <  2:512206/167‑1                                                                                                                                                                                                                                                                                                                                                                                                                     TACAGGAATCTGTCAGCCTTTCGAGAGCCGGGCAATGATCCGGTCCAGTGCATTGGCAAACGCCTGTTTCTCACGTTCGCCATAGGCCGCCTGCCCGCCCCCCACCTGGCCCTGCTCACGCAGCTCGGTGAACAGGTTGCGCGCCGCCAGGCGGTCGCCCATGTTGCGCTCGTCGAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5955966‑5956204 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcggcaTGGATGCGGCCGACGACTACATTGTGGAGCACGCCGTGCCGGGCGAGCTGGTGATCTGCAGTGACGTGCCGCTGGCCGACCGCCTGGTGAAAAAGGGCGTGGCCGCGCTGGACCCGCGTGGGCGCGAGTTCGACGAGCGCAACATGGGCGACCGCCTGGCGGCG  <  AE015451/5956270‑5956107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.