New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5956204	25 (0.630)	3 (0.080)	3/318	NT	10.6%	coding (263/489 nt)	PP_5221	conserved protein of unknown function, UPF0178 family
	?	AE015451	= 5956270	27 (0.710)					coding (197/489 nt)	PP_5221	conserved protein of unknown function, UPF0178 family

GGCCCTGCTCACGCAGCTCGGTGAACAGGTTGCGCGCCGCCAGGCGGTCGCCCATGTTGCGCTCGTCGAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCATTGGACACTCTCTACATGAACTCAATGCGCCCATCATGCCTGAAGCGCAGCGAAAGCTG  >  AE015451/5956073‑5956488                                                                                                                                                                                                      |                                                                                                                                                                                                                           ggCCCTGCTCACGCAGCTCGGTGAACAGGTTGCGCGCCGCCAGGCGGTCGCCCATGTTGCGCTCGTCGAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATcgcg                                                                                                                                                                                         >  2:673879/1‑233 (MQ=255)                                   cgccgcCAGGCGGTCGCCCATGTTGCGCTCGTCGAACTCGCGCCCACGGGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATca                                                                                                                                                    >  1:423897/1‑236 (MQ=255)                                   cgccgcCAGGCGGTCGCCCATGTTGCGCTCGTCGAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCAtgc                                                                                                                                                                                                                         <  2:512206‑M2/167‑4 (MQ=255)                                     ccgccAGGCGGTCGCCCATGTTGCGCTCGTCGAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCATTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCAtgccgctggccgaccgcctggtgaaaaagggcg                                                                                                                                                                                           >  1:465388‑M2/1‑162 (MQ=255)                                                              cTCGTCGAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCg                                                                                                                          <  1:673880/235‑1 (MQ=255)                                                                    gAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTg                                                                                                                                                                             <  2:737802/178‑1 (MQ=255)                                                                    gAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTg                                                                                                                                                                             >  1:737803/1‑178 (MQ=255)                                                                    gAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGa                                                                                                                   >  1:552412/1‑236 (MQ=255)                                                                      aCTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACg                                                                                                                 <  1:393076/236‑1 (MQ=255)                                                                                                   aCGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGAGCAGGCGCACGATCGCGCACGCCGGCTTGGCCCCCGcc                                                                                                                                                                    >  2:84357/1‑156 (MQ=255)                                                                                                    cGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAg                                                                                                                                                                                                      <  2:335643/121‑1 (MQ=255)                                                                                                         tttttCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCgg                                                                               >  1:450465/1‑235 (MQ=255)                                                                                                             tCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCa                                                                                                             <  1:748394/201‑1 (MQ=255)                                                                                                                      ggTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATaca                                                                 >  1:367018/1‑236 (MQ=255)                                                                                                                             cAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCAtt                                                           <  2:367017/235‑1 (MQ=255)                                                                                                                                 ggCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGaa                                                                                                                                          >  2:271099/1‑152 (MQ=255)                                                                                                                                  gCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCATTgg                                                         <  2:552411/232‑1 (MQ=255)                                                                                                                                                  ccccagCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGCCGGCCGCATCCAcgccgctggccgaccgcctggtgaaaaagggcgtggccgc                                                                                                                                                                                    >  1:299270‑M2/3‑53 (MQ=255)                                                                                                                                                   aCCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCAtgccgctggccgaccgcctggtgaaaaagggcgtggccgcgctggacccgcgtgggcgcgagttcgacgagcgcaacatgggcgaccgcctggcggcgcgcaacctgttcaccgagctgcgtgagcagggccaggtggggggcgggcaggcggcct                                                                <  2:143307‑M2/208‑157 (MQ=255)                                                                                                                                                     cAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCAtt                                                           <  2:644634/211‑1 (MQ=255)                                                                                                                                                     cAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCAtt                                                           >  1:644635/1‑211 (MQ=255)                                                                                                                                                     cAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCATTGGACACTCTCTACATGAACTCAAt                                   >  1:739620/1‑235 (MQ=255)                                                                                                                                                                    ggCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCATTGGACACTCTCTACATGAACTCAATGCGCCCATCATGc                      <  1:291610/233‑1 (MQ=255)                                                                                                                                                                         gCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGACGGCGAACTTGACGATCAGATCCTTGGCCGCCttt                                                                                            >  2:34627/1‑157 (MQ=255)                                                                                                                                                                                    tAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCATTGGACACTCTCTACATGAACTCAAt                                   <  2:423896/204‑1 (MQ=255)                                                                                                                                                                                     aGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCATTGGACACTCTCTACATGAACTCAATGCGCCCATCATGCCTGAAGCGCAGCGAAAGCTg  <  1:546723/236‑1 (MQ=255)                                                                                                                                                                                        cgtcgGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGc                                                                                    >  1:271969/1‑151 (MQ=255)                                                                                                                                                                                         gccgGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCATTgg                                                         <  1:86326/175‑1 (MQ=255)                                                                                                                                                                                          tcgGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCAtt                                                           <  2:303727/174‑1 (MQ=255)                                                                                                                                                                                          tcgGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCAtt                                                           >  1:303728/1‑174 (MQ=255)                                                                                                                                                                                            ggCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGAta                                                                                                         >  1:59357/1‑125 (MQ=255)                                                                                                                                                                                                      |                                                                                                                                                                                                                           GGCCCTGCTCACGCAGCTCGGTGAACAGGTTGCGCGCCGCCAGGCGGTCGCCCATGTTGCGCTCGTCGAACTCGCGCCCACGCGGGTCCAGCGCGGCCACGCCCTTTTTCACCAGGCGGTCGGCCAGCGGCACGTCACTGCAGATCACCAGCTCGCCCGGCACGGCGTGCTCCACAATGTAGTCGTCGGCCGCATCCATGCCGCTGGGCACCACGATCAGGCGCACGATCGCGAACGCCGGCTTGGCCACCGCCTGCCCCGCCACCATCACCACCTCGAACTTGCGCTTGAGGGCGAACTTGACGATCAGATCCTTGGCCGCCTTGGGGCAGGCGTCGGCATCGATCCATACACGCATTGGACACTCTCTACATGAACTCAATGCGCCCATCATGCCTGAAGCGCAGCGAAAGCTG  >  AE015451/5956073‑5956488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.