New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1656686 =	37 (0.930)	3 (0.080)	3/318	NT	7.9%	coding (83/4527 nt)	PP_1449	conserved exported protein of unknown function
	?	AE015451	1656725 =	35 (0.930)					coding (44/4527 nt)	PP_1449	conserved exported protein of unknown function

CCGCCAGGGCGCCGGCCAGTTGCGACTGCCCGGCTGCGGTGGCGTTGTTCAGCACCAGGCCCGGGGTGGCAACGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCGGGCTCCAGCCGCGGGCGGGGCAGGTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGG  >  AE015451/1656471‑1656910                                                                                                                                                                                                                        |                                                                                                                                                                                                                                 gccggggccgccgcagggttggaactgagcctgcccggcagccgcctgcgcctggactaccaacgcgccttgtacaccagcgacctgccccgcccgcggctggagcccggcttctgggtgctggactggaccctgagcatctgattcacccacaacaaagagaacgagaaaatgcaaacactctcgcagttaccgcctgttcgcccggataccttGCGCTGGGCCCGAGCACGGc                                                                                                                                                                                                               >  1:666134‑M1/216‑235 (MQ=255)   gccAGGGCGCCGGCCAGTTGCGACTGCCCGGCTGCGGTGGCGTTGTTCAGCACCAGGCCCGGGGTGGCAACGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACg                                                                                                                                                                                                                 <  2:280561/231‑1 (MQ=255)          cgcCGGCCAGTTGCGACTGCCCGGCTGCGGTGGCGTTGTTCAGCACCAGGCCCGGGGTGGCAACGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGAtt                                                                                                                                                                                                     <  1:57598/236‑1 (MQ=255)                         aCTGCCCGGCTGCGGTGGCGTTGTTCAGCACCAGGCCCGGGGTGGCAACGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGAtt                                                                                                                                                                                                     <  2:534919/221‑1 (MQ=255)                                                ttCAGCACCAGGCCCGGGGTGGCAACGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGAtt                                                                                                                                                                                                     <  2:22420/198‑1 (MQ=255)                                                 tCAGCACCAGGCCCGGGGTGGCAACGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTg                                                                                                                                                               <  1:387253/235‑1 (MQ=255)                                                        cAGGCCCGGGGTGGCAACGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCga                                                                                                                                                            >  2:708208/1‑231 (MQ=255)                                                             ccGGGGTGGCAACGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGGAGATTGCCCAGCGCCAGGTa                                                                                                                                                                                      >  1:246478/1‑200 (MQ=255)                                                             ccGGGGTGGCAACGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTGACTGCGAGAGTGTTTg                                                                                                                                                   >  1:700727/1‑235 (MQ=255)                                                             ccGGGGTGGCAACGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGc                                                                                                                                                  >  1:462054/1‑236 (MQ=255)                                                                  gTGGCAACGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCAttt                                                                                                                                              >  1:521198/1‑235 (MQ=255)                                                                        aCGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTtctc                                                                                                                                          >  1:508237/1‑233 (MQ=255)                                                                        aCGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGt                                                                                                                                        >  1:272603/1‑235 (MQ=255)                                                                                       aaCTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGAt                                                                                                                                                                                                      >  1:165550/1‑158 (MQ=255)                                                                                                        ccccGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAgc                                                                                                                                                                                              <  2:142165/149‑1 (MQ=255)                                                                                                        ccccGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAgg                                                                                                        <  1:594974/235‑1 (MQ=255)                                                                                                        ccccGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAgg                                                                                                        <  1:220649/235‑1 (MQ=255)                                                                                                               gCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGgtcca                                                                                                   <  2:462053/233‑1 (MQ=255)                                                                                                                 gTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGc                                                                                                                                                                               <  2:222176/155‑1 (MQ=255)                                                                                                                                  cGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCggg                                                                              >  1:351920/1‑235 (MQ=255)                                                                                                                                   gATGACCGGCGCCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGc                                                                                                                                                  <  2:170249/166‑1 (MQ=255)                                                                                                                                            cACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAgtgt                                                                                                                                                      >  1:446218/1‑153 (MQ=255)                                                                                                                                                 cGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGAtt                                                                                                                                                                                                     <  2:77395/101‑1 (MQ=255)                                                                                                                                                   cacccacaacaaagagaacgagaaaatgcaaacactctcgcagttaccgcctgttcgcccggataccttGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCGGGCTc                                                                           <  1:10122‑M1/152‑1 (MQ=255)                                                                                                                                                        gTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTtgtgt                                                                                                                          >  1:88002/1‑168 (MQ=255)                                                                                                                                                               aTGACCGGGGTCCCCCCGGTGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCCGCGCAAGGTATCCg                                                                                                                                                                                  >  2:472013/1‑106 (MQ=255)                                                                                                                                                                   aacgagaaaatgcaaacactctcgcagttaccgcctgttcgcccggataccttGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCa                                                                                                                                                 <  1:70219‑M1/82‑1 (MQ=255)                                                                                                                                                                      gggTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCGGGCTCCAGCCGCGGGCGGGGCAGGTCGCTGGTGTAc                                            >  2:696558/1‑233 (MQ=255)                                                                                                                                                                             cccGGGGCCGCTGGCTGCTTCCGGGCCTGTCTGAGCCAGGGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGgtccagt                                                                                                 <  2:147918/173‑1 (MQ=255)                                                                                                                                                                                                  cAGTCCTGTCTGCGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAgg                                                                                                        <  2:178226/145‑1 (MQ=255)                                                                                                                                                                                                     tCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCGGGCTCCAGCCGCGGGCGGGGCAGGTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAggcggc             <  2:635590/233‑1 (MQ=255)                                                                                                                                                                                                          tCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCGGGCTCCAGCCGCGGGCGGGGCAGGTCGCTGGTGTACAAGGCGCGtt                                  <  1:48140/207‑1 (MQ=255)                                                                                                                                                                                                           cTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCGGGCTCCAGCCGCGGGCGGGGCAg                                                         >  1:229681/1‑183 (MQ=255)                                                                                                                                                                                                            tGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCGGGCTCCAGCCGCGGGCGGGGCAGGTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCa    <  1:708209/235‑1 (MQ=255)                                                                                                                                                                                                             gAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGgtccagtc                                                                                                >  1:687092/1‑142 (MQ=255)                                                                                                                                                                                                             gAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGgtccagtc                                                                                                <  2:687091/142‑1 (MQ=255)                                                                                                                                                                                                             gAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCGGGCTCCAGCCGCGGGCGGGGCAGGTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAg   >  1:442231/1‑235 (MQ=255)                                                                                                                                                                                                               gCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCGGGCTCCAGCCGCGGGCGGGGCAGGTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAgg  <  2:442230/234‑1 (MQ=255)                                                                                                                                                                                                               gCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCGGGCTCCAGCCGCGGGCGGGGCAGGTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAgg  <  2:628282/234‑1 (MQ=255)                                                                                                                                                                                                                  aGTGCGGCGTTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCGGGCTCCAGCCGCGGGCGGGGCAGGTCGCTGGTGTACAAGGCGCGTTGGTAGTCcaggcgca                   <  2:427924/214‑1 (MQ=255)                                                                                                                                                                                                                       ggcgCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGGAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGgtccagt                                                                                                 >  2:216385/1‑131 (MQ=255)                                                                                                                                                                                                                        |                                                                                                                                                                                                                                 CCGCCAGGGCGCCGGCCAGTTGCGACTGCCCGGCTGCGGTGGCGTTGTTCAGCACCAGGCCCGGGGTGGCAACGTTGTAGTCGATGAACTGGTTGTGTGACAGCCCCGTGGCGTTGGGCGGCACGATGTCGATGACCGGCACCCCGTGGCCGTTATGGATGACCGGGGTCCCCCCGGGGCCGCTGGCTGCTTCCAGTCCTGTCTGAGCCAGTGCGGCGCTGGGCCCGAGCACGGCGAGGAAGATTGCCCAGCGCAAGGTATCCGGGCGAACAGGCGGTAACTGCGAGAGTGTTTGCATTTTCTCGTTCTCTTTGTTGTGGGTGAATCAGATGCTCAGGGTCCAGTCCAGCACCCAGAAGCCGGGCTCCAGCCGCGGGCGGGGCAGGTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGG  >  AE015451/1656471‑1656910

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.