New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1954483	32 (0.800)	3 (0.080)	3/322	NT	8.4%	coding (807/1494 nt)	PP_1752	conserved protein of unknown function
	?	AE015451	= 1954519	35 (0.910)					coding (843/1494 nt)	PP_1752	conserved protein of unknown function

ATGCGCCATGGCACATCATCGAAGGGGTAGACCCGAATTACCGCAGCCTGGCGGTGGGGCGCATTCTGCTGGAAAGCCTGCAAGCCGCGCTGGCCCACAATCCCAAGGGCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTGGACCCGCGTCAGTACCGTATCGTACCGATTGCCGCGCCGACCGAAGAAGAGCGCGCCCAGCCGTAC  >  AE015451/1954290‑1954708                                                                                                                                                                                                  |                                                                                                                                                                                                                                  aTGCGCCATGGCACATCATCGAAGGGGTAGACCCGAATTACCGCAGCCTGGCGGTGGGGCGCATTCTGCTGGAAAGCCTGCAAGCCGCGCTGGCCCACAATCCCAAGGGCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGaa                                                                                                                                                                                               >  2:580858/1‑230 (MQ=255)      ccATGGCACATCATCGAAGGGGTAGACCCGAATTACCGCAGCCTGGCGGTGGGGCGCATTCTGCTGGAAAGCCTGCAAGCCGCGCTGGCCCACAATCCCAAGGGCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAAcaggcgc                                                                                                                                                                                        <  1:194759‑M2/232‑8 (MQ=255)             acaTCATCGAAGGGGTAGACCCGAATTACCGCAGCCTGGCGGTGGGGCGCATTCTGCTGGAAAGCCTGCAAGCCGCGCTGGCCCACAATCCCAAGGGCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTggccggc                                                                                                                                                                             >  1:15037/1‑236 (MQ=255)                                       tACCGCAGCCTGGCGGTGGGGCGCATTCTGCTGGAAAGCCTGCAAGCCGCGCTGGCCCACAATCCCAAGGGCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACTTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAgcgc                                                                                                                                                           >  1:573130/1‑228 (MQ=255)                                       tACCGCAGCCTGGCGGTGGGGCGCATTCTGCTGGAAAGCCTGCAAGCCGCGCTGGCCCACAATCCCAAGGGCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAAcagg                                                                                                                                                                                           <  1:377728‑M2/196‑5 (MQ=255)                                                      gTGGGGCGCATTCTGCTGGAAAGCCTGCAAGCCGCGCTGGCCCACAATCCCAAGGGCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCg                                                                                                                                                                                                                         <  1:151837/151‑1 (MQ=255)                                                      gTGGGGCGCATTCTGCTGGAAAGCCTGCAAGCCGCGCTGGCCCACAATCCCAAGGGCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCg                                                                                                                                                                                                                         >  2:151837/1‑151 (MQ=255)                                                                   tgctgGAAAGCCTGCAAGCCGCGCTGGCCCACAATCCCAAGGGCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGgt                                                                                                                                 <  2:534377/226‑1 (MQ=255)                                                                                                        cAAGGGCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCCTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAAcagccgcaaggtcatgtccagggcgccaagcagg                                                                                                                                                             <  1:168457‑M2/161‑35 (MQ=255)                                                                                                          aGGGCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCcgccgc                                                                                   >  2:595916/1‑233 (MQ=255)                                                                                                            ggCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCcgcggg                                                                                >  2:575458/1‑232 (MQ=255)                                                                                                            ggCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGt                                                                                 >  2:501657/1‑233 (MQ=255)                                                                                                            ggCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATAAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTggc                                                                              <  1:680165/236‑1 (MQ=255)                                                                                                             gCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCg                                                                                                                                                   <  2:596392/166‑1 (MQ=255)                                                                                                             gCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCg                                                                                                                                                   >  1:596393/1‑166 (MQ=255)                                                                                                                  cACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTggcggcgg                                                                         >  1:476978/1‑235 (MQ=255)                                                                                                                   aCCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTggc                                                                              >  1:557615/1‑229 (MQ=255)                                                                                                                   aCCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGGGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGGGTTc                                                                                                                             >  2:159284/1‑182 (MQ=255)                                                                                                                            ccGTGGCTCCATTGGCCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTgg                                                                   <  1:677607/230‑1 (MQ=255)                                                                                                                                ggCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTGGACCCGCGt                                                           >  1:4779/1‑235 (MQ=255)                                                                                                                                ggCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTGGACCCGCGt                                                           >  1:699278/1‑235 (MQ=255)                                                                                                                                     cATGGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACgccgcc                                                                                                           <  2:4627/182‑1 (MQ=255)                                                                                                                                             cGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTGGACCCGCGTCAGTAcctgtctct                                             >  1:742087/1‑229 (MQ=255)                                                                                                                                                  cgtCGACGACCGCAGCCTGCTTGGCGCCATGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAgc                                                                                                                                                             <  2:612/117‑1 (MQ=255)                                                                                                                                                  caTCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGttcggtgatcaactggtcctgatagtcggccttgtccgggcgcaaggtcgtgtccagggcgccaagcaggctgcggtcgtg                                                                                                                                                  >  2:245297‑M1/1‑49 (MQ=255)                                                                                                                                                  caTCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCg                                                                                                                                                   >  1:291384/1‑129 (MQ=255)                                                                                                                                                  caTCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCg                                                                                                                                                   <  2:291383/129‑1 (MQ=255)                                                                                                                                                  caTCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTGGACCCGCGTCAGTACCGTATCGTACCg                                         >  1:310376/1‑235 (MQ=255)                                                                                                                                                  caTCGACGACCGCAGCCTGCTGGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCa                                                                                                                                                <  2:164238/132‑1 (MQ=255)                                                                                                                                                      cacgaccGCAGCCTGCTTGGCGCCCTGGACACGACCTTGCGCCCGGACAAGGCCGACTATCAGGACCAGTTGATCACCGAAcaggcgcaaggtcatgtccagggcgccaagcaggctgcggtcgtcgatg                                                                                                                                              >  2:245297‑M2/2‑81 (MQ=255)                                                                                                                                                       acgacCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACACGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCa                                                                                                                      >  2:623233/1‑153 (MQ=255)                                                                                                                                                       acgacCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTGGACCCGCGTCAGTACCGTATCGTAGCGATTGc                                    >  1:362174/1‑235 (MQ=255)                                                                                                                                                            cGCAGCCTGCTTGGCGCCCTGGACATGACCTGGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGgtgt                                                                                                                               <  2:35788/139‑1 (MQ=255)                                                                                                                                                               aGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGttcggtgatcaactgctcctgatagtcggccttgtccacgcgcaaggtcctgtccagggcgc                                                                                                                                                                     >  2:168457‑M1/1‑36 (MQ=255)                                                                                                                                                                gCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTGGACCCGCGTCa                                                         <  1:5082/205‑1 (MQ=255)                                                                                                                                                                 ccTGCTTGGCGCCCTGGACATGACCTTGCGGCTGttcggtgatcaactgttcctgatagtcggccttgtccaggcgcagggtcatgtccagggcgccaagcaggctgcggtcgtcgatgctgcggcccaatggagccacgttgccctggtgcttgcccttg                                                                                                    <  1:168457‑M1/161‑128 (MQ=255)                                                                                                                                                                 ccTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGTGGCGGCGCTGGACCCGCGTCAGTACCGTATCGTACCGGTTGCCGCGccgac                           >  2:272631/1‑234 (MQ=255)                                                                                                                                                                         gcgcCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTGGACCCGCGTCAGTACCGTATCGTACCGATTGCCGCGCCGACCGAAGAagag                 >  1:524134/1‑236 (MQ=255)                                                                                                                                                                         gcgcCCTGGACAGGACCTTGCGCGTGGACAAGGCCGACTATCAGGAGCAGTTGATCACCGAAcaggcgcaaggtcatgtccagggcgccaagcaggct                                                                                                                                                           >  2:168457‑M2/1‑62 (MQ=255)                                                                                                                                                                             ccTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTgg                                                                   <  2:742086/182‑1 (MQ=255)                                                                                                                                                                                            gcgcCTGttcggtgatcaactgttcctgatagtcggccttgtccaggcgcaaggtcatgtccagggcgccaagcaggctgcggtcgtcgatgctgcggcccaatggagccacgttgccctggtgcttgcccttgggattgtgggccagcgcggcttgcaggctttccagcagaatgcgccccaccgccaggctgcggtaattcgggtctaccccttcgatgatgtgccatgg  <  1:194759‑M1/232‑226 (MQ=255)                                                                                                                                                                                              gcCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTgg                                                                   >  2:300527/1‑165 (MQ=255)                                                                                                                                                                                              gcCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTgg                                                                   <  1:300528/165‑1 (MQ=255)                                                                                                                                                                                               ccTGttcggtgatcaactgttcctgatagtcggccttgtccaggcgcaaggtcatgtccagggcgccaagcaggctgcggtcgtcgatgctgcggcccaatggagccacgttgccctggtgcttgcccttgggattgtgggccagcgcggcttgcaggctttccagcagaatgcgccccaccgccaggctgcggta                                   <  1:377728‑M1/196‑193 (MQ=255)                                                                                                                                                                                                  |                                                                                                                                                                                                                                  ATGCGCCATGGCACATCATCGAAGGGGTAGACCCGAATTACCGCAGCCTGGCGGTGGGGCGCATTCTGCTGGAAAGCCTGCAAGCCGCGCTGGCCCACAATCCCAAGGGCAAGCACCAGGGCAACGTGGCTCCATTGGGCCGCAGCATCGACGACCGCAGCCTGCTTGGCGCCCTGGACATGACCTTGCGCCTGGACAAGGCCGACTATCAGGAACAGTTGATCACCGAACAGGCGCGTCTGGCCGGCCTGCTGCGTGACAAGCGCATGCGCCGGCACGCCCTGGTGGCGGTGTTCGAAGGCAACGACGCCGCCGGCAAGGGGGGCGCCATCCGCCGCGTGGCGGCGGCGCTGGACCCGCGTCAGTACCGTATCGTACCGATTGCCGCGCCGACCGAAGAAGAGCGCGCCCAGCCGTAC  >  AE015451/1954290‑1954708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.