New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2563175	18 (0.450)	3 (0.080)	3/318	NT	16.2%	coding (913/1137 nt)	dauA	catabolic D‑arginine dehydrogenase, FAD‑dependent
	?	AE015451	= 2563250	14 (0.370)					coding (988/1137 nt)	dauA	catabolic D‑arginine dehydrogenase, FAD‑dependent

CTTCACCTTCCCTGGTCCGGCAGAGCAGGACTTTACTCGCTGGCCTGCGGTGATTGGTGTCGATGAAAGCTTCTACTTCAAGCCTGATGCCGGCCAACTGTTGGGGTCGCCAGCCAATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATC  >  AE015451/2562940‑2563409                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           cTTCACCTTCCCTGGTCCGGCAGAGCAGGACTTTACTCGCTGGCCTGCGGTGATTGGTGTCGATGAAAGCTTCTACTTCAAGCCTGATGCCGGCCAACTGTTGGGGTCGCCAGCCAATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCG                                                                                                                                                                                                                                            <  1:570257‑M1/236‑1 (MQ=255)                            agACGTTACTCGCTGGCCTGCGGTGATTGGTGTCGATGAAAGCTTCTACTTCAAGCCTGATGCCGGCCAACTGTTGGGGTCGCCAGCCAATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGcgttcgtt                                                                                                                                                                                                                               <  1:685730/221‑1 (MQ=255)                                     tCGCTGGCCTGCGGTGATTGGTGTCGATGAAAGCTTCTACTTCAAGCCTGATGCCGGCCAACTGTTGGGGTCGCCAGCCAATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGa                                                                                                                                                                                                        >  1:527886/1‑236 (MQ=255)                                                        ggTGTCGATGAAAGCTTCTACTTCAAGCCTGATGCCGGCCAACTGTTGGGGTAGCCAGCCAATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGa                                                                                                                                                                                              >  2:698439/1‑227 (MQ=255)                                                                  aaaGCTTCTACTTCAAGCCTGATGCCGGCCAACTGTTGGGGTCGCCAGCCAATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTg                                                                                                                                                                                                                                       >  1:522133/1‑176 (MQ=255)                                                                       ttCTACTTCAAGCCTGATGCCGGCCAACTGTTGGGGTCGCCAGCCAATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTctg                                                                                                                                                                      >  1:57340/1‑236 (MQ=255)                                                                                                               cagccaATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGtt                                                                                                                                                                                                  <  2:582645/168‑1 (MQ=255)                                                                                                                agccaATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGcggcccc                                                                                                                                                          <  2:643243‑M2/207‑8 (MQ=255)                                                                                                                              cGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGcggc                                                                                                                                                             <  1:501865‑M2/190‑5 (MQ=255)                                                                                                                              cGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGgcg                                                                                                                          <  2:57340/225‑1 (MQ=255)                                                                                                                                          aGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCcgc                                                                                                                                                                               >  2:665613/1‑160 (MQ=255)                                                                                                                                          aGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAgggggg                                                                                                                                                    <  2:656916/187‑1 (MQ=255)                                                                                                                                                   tgcCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGc                                                                                          <  2:522132/235‑1 (MQ=255)                                                                                                                                                                cGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGccagccagaaaaacgcgggggcatgcgcatcgaaaccgatcaccaggtcgccgt                                                                                                                                                                                      >  2:280680‑M1/1‑77 (MQ=255)                                                                                                                                                                                        caTGGAAGCGAGGACCACCCGGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGt                                                                                                                                                                                                          <  2:81322/87‑1 (MQ=255)                                                                                                                                                                                          ttGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGt                                                                   >  2:474689/1‑220 (MQ=255)                                                                                                                                                                                          ttGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGgcg                                                   >  1:214066/1‑236 (MQ=255)                                                                                                                                                                                           tGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGccagccagaaaaacgcgggggcatgcgcatcgaaaccgatcaccaggtcgccgtcggcaacgaacgaacgcaacccggcccaggagtggctcgggcggcggatcgccagggtggtcatggctt                                                                                                                 >  1:665614‑M1/1‑50 (MQ=255)                                                                                                                                                                                           tGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGCCGCCGACCTGGTGATCggg                                                                                                                                                                                                   >  2:103361/1‑90 (MQ=255)                                                                                                                                                                                            gAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGcggcccaggtgtggctcgggcg                                                                                                                                           >  2:402462‑M2/1‑124 (MQ=255)                                                                                                                                                                                             aaGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACTCCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGcggcccaggtgtggctcgggcggcggatcgccagggtggtcatggcttca                                                                                                               >  1:665614‑M2/1‑123 (MQ=255)                                                                                                                                                                                                      ccaccCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGgcgc                                                  <  2:422889/225‑1 (MQ=255)                                                                                                                                                                                                      ccaccCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGgcgc                                                  >  1:422890/1‑225 (MQ=255)                                                                                                                                                                                                                gATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCt                                                                      <  2:513377/195‑1 (MQ=255)                                                                                                                                                                                                                       cgccCGAGCCACACCTGGGCCGccagccagaaaaacgcgggggcatgcgcatcgaaaccgatcaccaggtcgccgtcggcaacgaacgaacgcaacccggcccaggtgtggctcgggcggcggatcgccagggtggtcatggcttc                                                                                                                >  2:402462‑M1/1‑22 (MQ=255)                                                                                                                                                                                                                          ccGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCa                   <  2:527885/236‑1 (MQ=255)                                                                                                                                                                                                                           cgggCCGCACCTGGGCCGGGTTGCGTTCGTTCGTTGCTGACGGCGGCCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCACCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCg                                 <  1:253998/218‑1 (MQ=255)                                                                                                                                                                                                                                      ggggcCGccagccagaaaaacgcgggggcatgcgcatcgaaaccgatcaccaggtcgccgtcggcaacgaacgaacgcaacccggcccaggtgtggctcgggcggcggatcgccagggtggtcatggcttcaatgttgtaaatacccaaggccacgtcgaactcctcgggcgcggcatcctggggctcaaccgggtcggcattggct                                    <  2:643243‑M1/206‑201 (MQ=255)                                                                                                                                                                                                                                         gccgccagccagaaaaacgcgggggcatgcgcatcgaaaccgatcaccaggtcgccgtcggcaacgaacgaacgcaacccggcccaggtgtggctcgggcggcggatcgccagggtggtcatggcttcaatgttgtaaatacccaaggccacgtcgaactcctcgggcgcggcatcctggggctcaaccg                                                  <  1:501865‑M1/190‑187 (MQ=255)                                                                                                                                                                                                                                           cGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATc  >  1:363883/1‑236 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           CTTCACCTTCCCTGGTCCGGCAGAGCAGGACTTTACTCGCTGGCCTGCGGTGATTGGTGTCGATGAAAGCTTCTACTTCAAGCCTGATGCCGGCCAACTGTTGGGGTCGCCAGCCAATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATC  >  AE015451/2562940‑2563409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.