New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2563175	18 (0.450)	3 (0.080)	3/318	NT	16.2%	coding (913/1137 nt)	dauA	catabolic D‑arginine dehydrogenase, FAD‑dependent
	?	AE015451	= 2563250	14 (0.370)					coding (988/1137 nt)	dauA	catabolic D‑arginine dehydrogenase, FAD‑dependent

AGCCAATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTCCCGTTTTCCCGCGCGG  >  AE015451/2563051‑2563469                                                                                                                                                                                                        |                                                                                                                                                                                                                            agccaATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGcggcccc                                                                                                                                                                                                                      <  2:643243‑M2/207‑8 (MQ=255)               cGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGcggc                                                                                                                                                                                                                         <  1:501865‑M2/190‑5 (MQ=255)               cGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGgcg                                                                                                                                                                                      <  2:57340/225‑1 (MQ=255)                           aGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAgggggg                                                                                                                                                                                                                <  2:656916/187‑1 (MQ=255)                                    tgcCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGc                                                                                                                                                      <  2:522132/235‑1 (MQ=255)                                                                           ttGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGt                                                                                                                               >  2:474689/1‑220 (MQ=255)                                                                           ttGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGgcg                                                                                                               >  1:214066/1‑236 (MQ=255)                                                                             gAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGcggcccaggtgtggctcgggcg                                                                                                                                                                                                       >  2:402462‑M2/1‑124 (MQ=255)                                                                              aaGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACTCCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGcggcccaggtgtggctcgggcggcggatcgccagggtggtcatggcttca                                                                                                                                                                           >  1:665614‑M2/1‑123 (MQ=255)                                                                                       ccaccCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGgcgc                                                                                                              >  1:422890/1‑225 (MQ=255)                                                                                       ccaccCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGgcgc                                                                                                              <  2:422889/225‑1 (MQ=255)                                                                                                 gATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCt                                                                                                                                  <  2:513377/195‑1 (MQ=255)                                                                                                           ccGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCa                                                                               <  2:527885/236‑1 (MQ=255)                                                                                                            cgggCCGCACCTGGGCCGGGTTGCGTTCGTTCGTTGCTGACGGCGGCCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCACCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCg                                                                                             <  1:253998/218‑1 (MQ=255)                                                                                                                            cGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATc                                                              >  1:363883/1‑236 (MQ=255)                                                                                                                                 tGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCAt                                                          <  1:747894/235‑1 (MQ=255)                                                                                                                                    gttcgttcgttGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCgctgc                                                                                                       <  1:703428/187‑5 (MQ=255)                                                                                                                                                   aCGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGcggcccaggtgtggctcgggcggcggatcgccagggtggtcatggcttcaatgttgtaaatacccaaggccacgtcg                                                                                                                                                >  2:280680‑M2/1‑54 (MQ=255)                                                                                                                                                            tGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGgc                                                                                                                <  2:358793/154‑1 (MQ=255)                                                                                                                                                                                           gTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTCCCGGTTTCCCGCGCgg  >  1:349583/1‑233 (MQ=255)                                                                                                                                                                                                        |                                                                                                                                                                                                                            AGCCAATGCCGACCCGGTTGAGCCCCAGGATGCCGCGCCCGAGGAGTTCGACGTGGCCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTCCCGTTTTCCCGCGCGG  >  AE015451/2563051‑2563469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.