New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4173021	29 (0.730)	3 (0.080)	3/318	NT	8.8%	coding (655/825 nt)	PP_3671	Oxidoreductase, aldo/keto reductase family
	?	AE015451	= 4173051	35 (0.930)					coding (685/825 nt)	PP_3671	Oxidoreductase, aldo/keto reductase family

GGTGGTGGAAACCCTGGGCGCGCCGTTGTCGGCAATTCAGGTGGAATACCATGTTCTGCTCAGCCAGCAACCGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGCCCCGGACTGGAACAGCTGAGGCCGCCGCGCAAGTCATTGTTCTTGGGTGATGACCTGCTTCAACCGCTCGCTCGCCGGTGCC  >  AE015451/4172801‑4173254                                                                                                                                                                                                                             |                                                                                                                                                                                                                                          ggtggtGGAAACCCTGGGCGCGCCGTTGTCGGCAATTCAGGTGGAATACCATGTTCTGCTCAGCCAGCAACCGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCgcg                                                                                                                                                                                                                             >  1:463315/1‑233 (MQ=255)                   cgcgcCGTTGTCGGCAATTCAGGTGGAATACCATGTTCTGCTCAGCCAGCAACCGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGcca                                                                                                                                                                                                          <  1:39776‑M2/236‑4 (MQ=255)                                     tCAGGTGGAATACCATGTTCTGCTCAGCCAGCAACCGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAgg                                                                                                                                                                                                                                     <  1:477908/191‑1 (MQ=255)                                                            tCAGCCAGCAACCGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAg                                                                                                                                                                                         <  2:390093/212‑1 (MQ=255)                                                                   gcAACCGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGCAAACCa                                                                                                                                                                                          >  2:632685/1‑204 (MQ=255)                                                                        cGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCg                                                                                                                                                           >  1:212279/1‑230 (MQ=255)                                                                             cTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGAt                                                                                                                                                     >  2:557215/1‑231 (MQ=255)                                                                                      gCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGctttggg                                                                                                                                                                                                                                    <  1:196453‑M1/143‑8 (MQ=255)                                                                                         cgcgCCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGa                                                                                                                                                                   <  2:405879/205‑1 (MQ=255)                                                                                           cgGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCa                                                                                                                                  <  1:662372/236‑1 (MQ=255)                                                                                                           cTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGctttggggatcgccgccacgccgtcctggtccagcagccattt                                                                                                                                                                                                >  1:433147‑M1/1‑115 (MQ=255)                                                                                                           cTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGctttggggatcgccgccacgccgtcctggtccagcagccattt                                                                                                                                                                                                <  2:433146‑M1/158‑44 (MQ=255)                                                                                                              aCCGCCTACACCCCCCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGAt                                                                                                                                                     <  2:661224/198‑1 (MQ=255)                                                                                                                cGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAg                                                                                                                <  1:187678/233‑1 (MQ=255)                                                                                                                         cccGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCg                                                                                                                                          >  2:722736/1‑198 (MQ=255)                                                                                                                              tGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGc                                                                                               <  1:576370/236‑1 (MQ=255)                                                                                                                               ggCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAg                                                                                                <  2:733308/234‑1 (MQ=255)                                                                                                                                    gcgGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGa                                                                                                                                                <  1:482120/181‑1 (MQ=255)                                                                                                                                     cgGCCAGGCAGCGGCGCAGCCGGGGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGaaaa                                                                                                                                                                                             <  2:52555/135‑1 (MQ=255)                                                                                                                                          aGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGCAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCa                                                                                                            >  1:57765/1‑211 (MQ=255)                                                                                                                                            gCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGcccc                                                                                 <  1:557216/236‑1 (MQ=255)                                                                                                                                                 ggcgCAACCGGTGATCCAGGCGATCGCCCGCAAGCAGGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCg                                                                                                                            <  2:318290/188‑1 (MQ=255)                                                                                                                                                    gcAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAAc                                                                                                                                                                                <  1:690099/133‑1 (MQ=255)                                                                                                                                                     cAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGAcc                                                                                                                                           <  2:39776/169‑1 (MQ=255)                                                                                                                                                      aGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGAc                                                                                                                                            <  1:227128/167‑1 (MQ=255)                                                                                                                                                                                         gTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGGTGACCGTGCCg                                                                                                                                                           >  2:665784/1‑117 (MQ=255)                                                                                                                                                                                                     cagGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGAt                                                                                                                                                     <  2:529084/111‑1 (MQ=255)                                                                                                                                                                                                     cagGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGAt                                                                                                                                                     >  1:529085/1‑111 (MQ=255)                                                                                                                                                                                                       ggTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGAcc                                                                                                                                           <  1:686946/119‑1 (MQ=255)                                                                                                                                                                                                       ggTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGAcc                                                                                                                                           >  2:686945/1‑119 (MQ=255)                                                                                                                                                                                                            cgcTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTg                                                                                     >  2:594181/1‑168 (MQ=255)                                                                                                                                                                                                            cgcTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTg                                                                                     <  1:594182/168‑1 (MQ=255)                                                                                                                                                                                                              cTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCccgc                                                                                           <  1:544093/160‑1 (MQ=255)                                                                                                                                                                                                                 aaaTGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGccagcagccatttcagcgccacctggctgggcagcacgccatgcttgcgggcgatcgcctggatcaccggctgcgccgctgcctggccgcgtgccagcggggtgtaggcggtgag                                                                                          <  2:433146‑M2/158‑116 (MQ=255)                                                                                                                                                                                                                 aaaTGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGccagcagccatttcagcgccacctggctgggcagcacgccatgcttgcgggcgatcgcctggatcaccggctgcgccgctgcctggccgcgtgccagcggggtgtaggcggtgag                                                                                          >  1:433147‑M2/1‑43 (MQ=255)                                                                                                                                                                                                                           tgGctttggggatcgccgccacgccgtcctggtccagcagccatttcagcgccacctggctgggcagcacgccatgcttgcgggcgatcgcctggatcaccggctgcgccgctgcctggccgcgtgccagcggggtgtaggcggtgagcaacaggtcatggccgcgggcgaagtcgagtagcggttgctggctgagcagaacatggtattccacctgaattgccgacaacggcgcg  <  1:39776‑M1/236‑234 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                                                                          GGTGGTGGAAACCCTGGGCGCGCCGTTGTCGGCAATTCAGGTGGAATACCATGTTCTGCTCAGCCAGCAACCGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGCCCCGGACTGGAACAGCTGAGGCCGCCGCGCAAGTCATTGTTCTTGGGTGATGACCTGCTTCAACCGCTCGCTCGCCGGTGCC  >  AE015451/4172801‑4173254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.