New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4173021	29 (0.730)	3 (0.080)	3/318	NT	8.8%	coding (655/825 nt)	PP_3671	Oxidoreductase, aldo/keto reductase family
	?	AE015451	= 4173051	35 (0.930)					coding (685/825 nt)	PP_3671	Oxidoreductase, aldo/keto reductase family

CGCGCCGTTGTCGGCAATTCAGGTGGAATACCATGTTCTGCTCAGCCAGCAACCGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGCCCCGGACTGGAACAGCTGAGGCCGCCGCGCAAGTCATTGTTCTTGGGTGATGACCTGCTTCAACCGCTCGCTCGCCGGTGCCGGCCGCCCGTAAAAGTAGCCCTGGAAGTGC  >  AE015451/4172819‑4173284                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                          cgcgcCGTTGTCGGCAATTCAGGTGGAATACCATGTTCTGCTCAGCCAGCAACCGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGcca                                                                                                                                                                                                                                        <  1:39776‑M2/236‑4 (MQ=255)                                          tCAGCCAGCAACCGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAg                                                                                                                                                                                                                       <  2:390093/212‑1 (MQ=255)                                                 gcAACCGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGCAAACCa                                                                                                                                                                                                                        >  2:632685/1‑204 (MQ=255)                                                      cGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCg                                                                                                                                                                                         >  1:212279/1‑230 (MQ=255)                                                           cTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGAt                                                                                                                                                                                   >  2:557215/1‑231 (MQ=255)                                                                       cgcgCCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGa                                                                                                                                                                                                 <  2:405879/205‑1 (MQ=255)                                                                         cgGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCa                                                                                                                                                                <  1:662372/236‑1 (MQ=255)                                                                                            aCCGCCTACACCCCCCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGAt                                                                                                                                                                                   <  2:661224/198‑1 (MQ=255)                                                                                              cGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAg                                                                                                                                              <  1:187678/233‑1 (MQ=255)                                                                                                       cccGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCg                                                                                                                                                                        >  2:722736/1‑198 (MQ=255)                                                                                                            tGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGc                                                                                                                             <  1:576370/236‑1 (MQ=255)                                                                                                             ggCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAg                                                                                                                              <  2:733308/234‑1 (MQ=255)                                                                                                                  gcgGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGa                                                                                                                                                                              <  1:482120/181‑1 (MQ=255)                                                                                                                   cgGCCAGGCAGCGGCGCAGCCGGGGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGaaaa                                                                                                                                                                                                                           <  2:52555/135‑1 (MQ=255)                                                                                                                        aGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGCAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCa                                                                                                                                          >  1:57765/1‑211 (MQ=255)                                                                                                                          gCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGcccc                                                                                                               <  1:557216/236‑1 (MQ=255)                                                                                                                               ggcgCAACCGGTGATCCAGGCGATCGCCCGCAAGCAGGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCg                                                                                                                                                          <  2:318290/188‑1 (MQ=255)                                                                                                                                  gcAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAAc                                                                                                                                                                                                              <  1:690099/133‑1 (MQ=255)                                                                                                                                   cAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGAcc                                                                                                                                                                         <  2:39776/169‑1 (MQ=255)                                                                                                                                    aGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGAc                                                                                                                                                                          <  1:227128/167‑1 (MQ=255)                                                                                                                                                                       gTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGGTGACCGTGCCg                                                                                                                                                                                         >  2:665784/1‑117 (MQ=255)                                                                                                                                                                                   cagGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGAt                                                                                                                                                                                   >  1:529085/1‑111 (MQ=255)                                                                                                                                                                                   cagGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGAt                                                                                                                                                                                   <  2:529084/111‑1 (MQ=255)                                                                                                                                                                                     ggTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGAcc                                                                                                                                                                         <  1:686946/119‑1 (MQ=255)                                                                                                                                                                                     ggTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGAcc                                                                                                                                                                         >  2:686945/1‑119 (MQ=255)                                                                                                                                                                                          cgcTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTg                                                                                                                   >  2:594181/1‑168 (MQ=255)                                                                                                                                                                                          cgcTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTg                                                                                                                   <  1:594182/168‑1 (MQ=255)                                                                                                                                                                                            cTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCccgc                                                                                                                         <  1:544093/160‑1 (MQ=255)                                                                                                                                                                                               aaaTGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGccagcagccatttcagcgccacctggctgggcagcacgccatgcttgcgggcgatcgcctggatcaccggctgcgccgctgcctggccgcgtgccagcggggtgtaggcggtgag                                                                                                                        <  2:433146‑M2/158‑116 (MQ=255)                                                                                                                                                                                               aaaTGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGccagcagccatttcagcgccacctggctgggcagcacgccatgcttgcgggcgatcgcctggatcaccggctgcgccgctgcctggccgcgtgccagcggggtgtaggcggtgag                                                                                                                        >  1:433147‑M2/1‑43 (MQ=255)                                                                                                                                                                                                            aCCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGCCCCGGACTGGAACAGCTGAGGCCGCCGCGCAAGTCATTGTTCTTGGGTGATGACCTGCTTCAACCGCtcgctcgc                                       >  1:621127/1‑226 (MQ=255)                                                                                                                                                                                                                         ggcggcGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGCCCCGGACTGGAACAGCTGAGGCCGCCGCGCAAGTCATTGTTCTTGGGTGATGACCTGCTTCAACCGCTCGCTCGCCGGTGCCGGCCGCCCGTAAAAg                 >  1:136346/1‑235 (MQ=255)                                                                                                                                                                                                                            ggcgATCGCCAAAGCCAGCAGCCGCTAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTccc                                                                                                                                                           >  2:94488/1‑94 (MQ=255)                                                                                                                                                                                                                             gcgATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGCCCCg                                                                                                              <  2:300582/138‑1 (MQ=255)                                                                                                                                                                                                                              cgATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGCCCCGGACTGGAACAGCTGAGgccgcc                                                                                        >  2:128558/1‑159 (MQ=255)                                                                                                                                                                                                                              cgATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGCCCCGGACTGGAACAGCTGAGgccgcc                                                                                        <  1:128558/159‑1 (MQ=255)                                                                                                                                                                                                                              cgATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGCCCCGGACTGGAACAGCTGAGGCCGCCGCGCAAGTCATTGt                                                                          >  2:359622/1‑173 (MQ=255)                                                                                                                                                                                                                                aTCCCCAACGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGTCGAAGACCGCCCAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGCCCCGGACTGGAACAGCTGAGGCCGCCGCGCAAg                                                                                 <  2:353282/164‑1 (MQ=255)                                                                                                                                                                                                                                   cccAAAGccagcagccatttcagcgccacctggctgggcagcacgccatgcttgcgggcgatcgcctggatcaccggctgcgccgctgcctggccgcgtgccagcggggtgtaggcggtgagcaacaggtcatggccgcgggc                                                                                                   <  1:196453‑M2/143‑137 (MQ=255)                                                                                                                                                                                                                                        aGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGCCCCGGACTGGAACAGCTGAGGCCGCCGCGCAAGTCATTGTTCTTGGGTGATGACCTGCTTCAACCGCTCGCTCGCCGGTGCCGGCCGCCCGTAAAAGTAGCCCTGGAAGTGc  <  1:701706/235‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                          CGCGCCGTTGTCGGCAATTCAGGTGGAATACCATGTTCTGCTCAGCCAGCAACCGCTACTCGACTTCGCCCGCGGCCATGACCTGTTGCTCACCGCCTACACCCCGCTGGCACGCGGCCAGGCAGCGGCGCAGCCGGTGATCCAGGCGATCGCCCGCAAGCATGGCGTGCTGCCCAGCCAGGTGGCGCTGAAATGGCTGCTGGACCAGGACGGCGTGGCGGCGATCCCCAAAGCCAGCAGCCGCGAAAACCAGCTGGCCAACCTGGCCGCGTTGACCGTGCCGCTGGATGACGAAGACCGCACAGCCATTGCCGGGCTGCCGAAAGACCAGCGCGTGGTCAGCCCGCCGTTTGCCCCGGACTGGAACAGCTGAGGCCGCCGCGCAAGTCATTGTTCTTGGGTGATGACCTGCTTCAACCGCTCGCTCGCCGGTGCCGGCCGCCCGTAAAAGTAGCCCTGGAAGTGC  >  AE015451/4172819‑4173284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.