New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2979378 =	14 (0.350)	3 (0.080)	3/320	NT	21.2%	coding (907/1689 nt)	PP_2605	conserved protein of unknown function
	?	AE015451	2979417 =	9 (0.240)					coding (868/1689 nt)	PP_2605	conserved protein of unknown function

AAATGGCCATTGCGGCGCGGTACCTGCGATACCGGCGCCCAGGCGCCCCCGTGGGCGCCTGCCGCAGACACCCGCCCACCCGCCTGTTCGCCCAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGTTCTTCGCACAACAACAGACGGCTGGCCGCTTTCTCGGTCAGCAATGTCACGCCACGATCAAGGGCGCTG  >  AE015451/2979290‑2979634                                                                                                                                |                                                                                                                                                                                                                          aaatggccATTGCGGCGCGGTACCTGCGATACCGGCGCCCAGGCGCCCCCGTGGGCGCCTGCCGCAGACACCCGCCCACCCGCCTGTTCGCCCAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCa                                                                                                                                               <  2:701992/204‑1 (MQ=255)    tggccATTGCGGCGCGGTACCTGCGATACCGGCGCCCAGGCGCCCCCGTGGGCGCCTGCCGCAGACACCCGCCCACCCGCCTGTTCGCCCAGGCGCAAACCAGCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCa                                                                                                                                     <  1:372017/211‑1 (MQ=255)         cggtggcttcccacatgatcgccagcgtatctcgcaactgatgccgcacgcgccggacggtgaccagcattactccgctgcgcccagggagaatagcggtgatggtttgcgcctgggcgCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCgg                                                                                                                                                                                       >  1:44582‑M2/120‑156 (MQ=255)         cggtggcttcccacatgatcgccagcgtatctcgcaactgatgccgcacgcgccggacggtgaccagcattactccgctgcgcccagggagaatagcggtgatggtttgcgcctgggcgCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCgg                                                                                                                                                                                       <  2:44582‑M2/37‑1 (MQ=255)                                  ggCGCCCAGGCGCCCCCGTGGGCGCCTGCCGCAGACACCCGCCCACCCGCCTGTTCGCCCAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCa                                                                                            >  1:44488/1‑222 (MQ=255)                                        cAGGCGCCCCCGTGGGCGCCTGCCGCAGACACCCGCCCACCCGCCTGTTCGCCCAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCg                                                                                                                     <  2:276363/191‑1 (MQ=255)                                           gcgcCCCCGTGGGCGCCTGCCGCAGACACCCGCCCACCCGCCTGTTCGCCCAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCg                                                                        >  2:599754/1‑233 (MQ=255)                                                    ccgcacgcgccggacggtgaccagcattactccgctgCGCCCAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCg                                                                                                                                            <  2:44582‑M1/119‑1 (MQ=255)                                                    ccgcacgcgccggacggtgaccagcattactccgctgCGCCCAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCg                                                                                                                                            >  1:44582‑M1/38‑156 (MQ=255)                                                           cTGCCGCAGACACCCGCCCACCCGCCTGTTCGCCCAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGTTCTTCGCACAACAACAGa                                                     >  1:21893/1‑236 (MQ=255)                                                                            ccacccgccTGTTCGCCCAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGTTCTTCGCACAACAACAGACGGCTGGCCGCTTtctc                                    <  1:599755/236‑1 (MQ=255)                                                                            ccacccgccTGTTCGCCCAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGTTCTTCGCACAACAACAGACGGCTGGCCGCTTtctc                                    >  1:671817/1‑236 (MQ=255)                                                                                            CCAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGTTCTTCGCacaacaaca                                                       <  1:80542‑M1/201‑1 (MQ=255)                                                                                             CAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGTTCTTCGCACAACAACAGACGGCTGGCCGCTTTCTCGGTCAGCAATGTCACGc                   <  1:457858‑M1/236‑1 (MQ=255)                                                                                              AGGCGCAGCCCATCGCCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCGCCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGtt                                                                      >  2:100445‑M1/1‑184 (MQ=255)                                                                                              AGGCGCAAACCATCACCGCTATTCTCCGTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGTTCTTCGCACAACAACAGACGGCTGGCCGCTTTCTCGGTc                                <  1:328945‑M1/222‑1 (MQ=255)                                                                                              AGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGTTCTTCGCACAACAACAGACGGCTGGCCGCTTTCTCGGTCAGCAATGTCACGc                   <  1:727647‑M1/235‑1 (MQ=255)                                                                                                 cagaatagcggtgctggtttgcgcctgggggAAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGc                                                                                                                                       <  2:739696‑M2/85‑1 (MQ=255)                                                                                                   cAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCCAACAGCGCGCCGTTGACCCGtt                                                                      >  2:84829/1‑179 (MQ=255)                                                                                                                    tctcCCTTGGCGCAGCGCAGTAATGCTGGTCACCGTCCGCCCCGTGCGGCATCAGTTCCGAGATACGCTGGCGATCATGTGGGAAGCTACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGAccc                                                                         <  1:692979/159‑1 (MQ=255)                                                                                                                        cctgggcgCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCgag                                                                                                                                                                          <  1:657557‑M2/50‑1 (MQ=255)                                                                                                                        cctgggcgCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCgag                                                                                                                                                                          >  2:657556‑M2/9‑58 (MQ=255)                                                                                                                         ctgggcgCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGTTCTTCGCACAACAACAGACGGCTGGCCGCTTTCTCGGTCAGCAATGTCAcgcccc                >  2:526486‑M2/8‑209 (MQ=255)                                                                                                                             gcgCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACGCCACGCGGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGTTCTTCGCACAACAACAGACGGCTGGCCGCTTTCTCGGt                                 >  1:493476‑M2/4‑190 (MQ=255)                                                                                                                              cgCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGTTCTTCGCACAACAACAGACGGCTGGCCGCTTTCTCGGTCAGCAATGTCACGCCACGATCAAgggcgccg  >  2:727745‑M2/3‑218 (MQ=255)                                                                                                                                |                                                                                                                                                                                                                          AAATGGCCATTGCGGCGCGGTACCTGCGATACCGGCGCCCAGGCGCCCCCGTGGGCGCCTGCCGCAGACACCCGCCCACCCGCCTGTTCGCCCAGGCGCAAACCATCACCGCTATTCTCCCTGGGCGCAGCGGAGTAATGCTGGTCACCGTCCGGCGCGTGCGGCATCAGTTGCGAGATACGCTGGCGATCATGTGGGAAGCCACCGCAGGCCAGCACCACACCACGCCGTGCGTAGATCGCTTGGCCATCGGCAAACAGCGCGCCGTTGACCCGTTCTTCGCACAACAACAGACGGCTGGCCGCTTTCTCGGTCAGCAATGTCACGCCACGATCAAGGGCGCTG  >  AE015451/2979290‑2979634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.