New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 6026867	23 (0.580)	3 (0.080)	3/316	NT	11.4%	coding (990/1140 nt)	PP_5277	Major facilitator family transporter
	?	AE015451	= 6026883	25 (0.670)					coding (974/1140 nt)	PP_5277	Major facilitator family transporter

GCGGTTGGCTTGGAGAAGATGCTATAGCGGCGATTCCGGGGCCTTGCGGCCCCCAAAATCATCAGGCAGAAACCGGCTCAAAGGCTCCGCGCCGCCGCGTCAATACAACCAACCCCGCAGCCCCGGCCGCCATCAGGAACAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGCCAGACTGGACACCAGCAGGGTCACCGCACAGCCAGTGAACAGGGTACGTCGCGACATATGGTCGGCCAGCGCGCCGATGG  >  AE015451/6026656‑6027105                                                                                                                                                                                                                                    |                                                                                                                                                                                                                               gCGGTTGGCTTGGAGAAGATGCTATAGCGGCGATTCCGGGGCCTTGCGGCCCCCAAAATCATCAGGCAGAAACCGGCTCAAAGGCTCCGCGCCGCCGCGTCAATACAACCAACCCCGCAGCCCCGGCCGCCATCAGGAACAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTgggcattg                                                                                                                                                                                                                        >  1:416879‑M2/1‑228 (MQ=255)                                 aTTCCGGGGCCTTGCGGCCCCCAAAATCATCAGGCAGAAACCGGCTCAAAGGCTCCGCGCCGCCGCGTCAATACAACCAACCCCGCAGCCCCGGCCGCCATCAGGAACAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTc                                                                                                                                                                                        >  1:125028/1‑236 (MQ=255)                                               cGGCCCCCAAAATCATCAGGCAGAAACCGGCTCAAAGGCTCCGCGCCGCCGCGTCAATACAACCAACCCCGCAGCCCCGGCCGCCATCAGGAACAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTa                                                                                                                                                                                                                 >  2:323673/1‑197 (MQ=255)                                               cGGCCCCCAAAATCATCAGGCAGAAACCGGCTCAAAGGCTCCGCGCCGCCGCGTCAATACAACCAACCCCGCAGCCCCGGCCGCCATCAGGAACAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTa                                                                                                                                                                                                                 <  1:323674/197‑1 (MQ=255)                                                          atcatcAGGCAGAAACCGGCTCAAAGGCTCCGCGCCGCCGCGTCAATACAACCAACCCCGCAGCCCCGGCCGCCATCAGGAACAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCatcatc                                                                                                                                                                                                    >  1:721980/1‑199 (MQ=255)                                                                                              gccgcGTCAATACAACCAACCCCGCAGCCCCGGCCGCCATCAGGAACAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCa                                                                                                                                                                          <  2:342355/189‑1 (MQ=255)                                                                                                  cgTCAATACACCCAACCCCGCAGCCCCGGCCGCCATCAGGAACAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTa                                                                                                                                                                                                                 <  2:306686/146‑1 (MQ=255)                                                                                                  cgTCAATACAACCAACCCCGCAGCCCCGGCCGCCATCAGGAACAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACaa                                                                                                                         >  1:100839/1‑234 (MQ=255)                                                                                                      aaTACGACCAACCCCGCAGCCCCGGCCGCCATCAGGAACAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACgg                                                                                                                      <  2:715430/233‑1 (MQ=255)                                                                                                           aaccacccCCGCAGCCCCGGCCGCCATCAGGACCAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTgggcattg                                                                                                                                                                                                                        >  2:159358‑M2/1‑122 (MQ=255)                                                                                                                accCCGCAGCCCCGGCCGCCATCAGGAACAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGAc                                                                                                                                                                     >  1:270168/1‑176 (MQ=255)                                                                                                                                         gAACAGCAACGCATGCCCGCTGACCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGa                                                                                                                                                                      <  2:125028/150‑1 (MQ=255)                                                                                                                                                aaCGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGaaca                                                                                                                                   >  1:660200/1‑178 (MQ=255)                                                                                                                                                 aCGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTgggcattggctgtttgctcgggccgttgttggccggg                                                                                                                                                                                           >  1:588358‑M2/1‑84 (MQ=255)                                                                                                                                                  cGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATacc                                                                                                             >  1:44038/1‑196 (MQ=255)                                                                                                                                                     aTGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCa                                                                                                  >  2:316221/1‑206 (MQ=255)                                                                                                                                                       gCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACgg                                                                                                                      <  1:43356/184‑1 (MQ=255)                                                                                                                                                          cGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGCGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGCCAGACTGGACACCAGCAgg                                                               <  1:423174/236‑1 (MQ=255)                                                                                                                                                                  cACTGGCTACCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGCCAGACTGGACACCAGCAGGGTCACCg                                                        <  1:494056/235‑1 (MQ=255)                                                                                                                                                                   aCTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGCCAGACTGGACACCAGCAGGGTCACCg                                                        <  2:627023/234‑1 (MQ=255)                                                                                                                                                                     tGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTgggcattggctgtttgctcgggccgttgttggccggggcggggagccagtggatcagcgggcatgcgttgctgttcctgatggcggccggggc                                                                                                                                   >  2:56350‑M2/1‑64 (MQ=255)                                                                                                                                                                          ccccgccccgGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACCACGGCCAGATAACCGGGgtgt                                                                                                     >  1:502262/1‑182 (MQ=255)                                                                                                                                                                           cccgcccagGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAgc                                                                                                                                                                                            <  2:155319/94‑1 (MQ=255)                                                                                                                                                                                                  gAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGCCAGACTGGACACCAGCAGGGTCACCg                                                        <  2:299596/203‑1 (MQ=255)                                                                                                                                                                                                  gAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGCCAGACTGGACACCAGCAGGGTCACCg                                                        >  1:299597/1‑203 (MQ=255)                                                                                                                                                                                                   aGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGcc                                                                                 >  2:722928/1‑177 (MQ=255)                                                                                                                                                                                                             cAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGCCAGACTGGACACCAGCAGGGTCACCGCACAGCCAGTGAACAGGGTACGTCGCGACATATGGTCGGCCa              <  1:332813/234‑1 (MQ=255)                                                                                                                                                                                                                      acaGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGCCAGACTGGACACCAGCAGGGTCACCGCACAGCCAGTGAACAGGGTACGTCGCGACATATGGTCGGCCAGCGCGCCGATg   <  1:748082/236‑1 (MQ=255)                                                                                                                                                                                                                      acaGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGCCAGACTGGACACCAGCAGGGTCACCGCACAGCCAGTGAACAGGGTACGTCGCGACATATGGTCGGCCAGCGCGCCGATg   <  1:722929/236‑1 (MQ=255)                                                                                                                                                                                                                       caGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGCCAGACTGGACACCAGCAGGGTCACCGCACAGCCAGTGAACAGGGTACGTCGCGACATATGGTCGGCCAGCGCGCCGATgg  >  1:507468/1‑236 (MQ=255)                                                                                                                                                                                                                         gTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCCCTGGCGCCGAACAACACCCACAACGGCCAGATCACCgggg                                                                                                        >  2:1647/1‑132 (MQ=255)                                                                                                                                                                                                                            gggCTCCGTgggccttggctgttcgctcgggccgttgttggccggggcggggagccagtggatcagcgggcatgcgttgctgttcctg                                                                                                                                                 >  1:467362‑M2/1‑9 (MQ=255)                                                                                                                                                                                                                            gggCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGCCAGACTGGACACCAGCAGGGTCACCGCACAGCCAg                                               <  1:74997/186‑1 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                                               GCGGTTGGCTTGGAGAAGATGCTATAGCGGCGATTCCGGGGCCTTGCGGCCCCCAAAATCATCAGGCAGAAACCGGCTCAAAGGCTCCGCGCCGCCGCGTCAATACAACCAACCCCGCAGCCCCGGCCGCCATCAGGAACAGCAACGCATGCCCGCTGATCCACTGGCTCCCCGCCCCGGCCAACAACGGCCCGAGCAAACAGCCAATGCCCCACAGTTGGGCTACGTGGGCATTGGCCCGTACCAACTCATCATCGCGGTAGCGCTCACCGATCAGCACCAGCGACAAGGTGAACAAGCCGCCGGCACTGGCGCCGAACAACACCCACAACGGCCAGATAACCGGGGTGTGCAACAGCAGCGGGATCGCCAGACTGGACACCAGCAGGGTCACCGCACAGCCAGTGAACAGGGTACGTCGCGACATATGGTCGGCCAGCGCGCCGATGG  >  AE015451/6026656‑6027105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.