New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	521092 =	66 (1.070)	4 (0.070)	4/328	NT	6.2%	coding (204/1092 nt)	anmK	Anhydro‑N‑acetylmuramic acid kinase
	?	AE015451	521162 =	58 (0.980)					coding (134/1092 nt)	anmK	Anhydro‑N‑acetylmuramic acid kinase

CACCCTGCTCGCAGCGAACAAGCGCTAAGCCATGGCGCTCTACTTGGGGGTGATGTCCGGCACCAGCCTCGATGGCCTGGATATCGCCCTGGTCGAACAAGGCGAGCAGCTTGAACTGCTCGCCACCCACTACCTGCCCATGCCCCCGGACCTGCGCCAGGACCTGCTGGCCCTGTGCAGCAGCGGCCCTGACGAGATTGCCCGTGCAGCACTGGCGGAAAACCGCTGGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/521326‑521092 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccagcAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAGGGTGGCCTTTTCCTGATCCATACGGGCAATCAGCGGCTGGCTCTGCTGCAGGAAGCGCTGACGCTCGTTCTTG  >  AE015451/521162‑521395                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CACCCTGCTCGCAGCGAACAAGCGCTAAGCCATGGCGCTCTACTTGGGGGTGATGTCCGGCACCAGCCTCGATGGCCTGGATATCGCCCTGGTCGAACAAGGCGAGCAGCTTGAACTGCTCGCCACCCACTACCTGCCCATGCCCCCGGACCTGCGCCAGGACCTGCTGGCCCTGTGCAGCAGCGGCCCTGACGAGATTGCCCGTGCAGCACTGGCGGAAAACCGCTGGGCCAGC                                                                                                                                                                                                                                            <  1:891586/235‑1                                                        TCCGGCACCAGCCTCGATGGCCTGGATATCGCCCTGGTCGAACAAGGCGAGCAGCTTGAACTGCTCGCCACCCACTACCTGCCCATGCCCCCGGACCTGCGCCAGGACCTGCTGGCCCTGTGCAGCAGCGGCCCTGACGAGATTGCCCGTGCAGCACTGGCGGAAAACCGCTGGGCCAGC                                                                                                                                                                                                                                            >  1:340282/1‑180                                                                                                                                                                               GTGCAGCAGCGGCCCTGACGAGATTGCCCGTGCAGCACTGGCGGAAAACCGCTGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAGGGTGGCCctgtct                                                              >  1:497582/1‑229                                                                                                                                                                                        CGGCCCTGACGAGATTGCCCGTGCAGCACTGGCGGAAAACCGCTGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTG                                                                                  <  2:497581/206‑1                                                                                                                                                                                             CTGACGAGATTGCCCGTGCAGCACTGGCGGAAAACCGCTGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATAT                                                                                                                                                       >  2:665246/1‑132                                                                                                                                                                                                                          GAAAACCGCTGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAGGGTGGCCTTTTCCTGATCCATACGGGCAATCAGCG                                        >  2:1110986/1‑214                                                                                                                                                                                                                                     GGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGA                                                                                                                              <  2:167600/117‑1                                                                                                                                                                                                                                        CAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCCAGTAGCGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAG                                                                           >  2:16365/1‑165                                                                                                                                                                                                                                        CAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAGGGTGGCCTTTTCCcg                                                            >  1:570650/1‑178                                                                                                                                                                                                                                        CAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAGGGTGGCCTTTTCCTGATCCATACGGGCAATCAGCGGCTGGCTCTGCTGCAGGAAGCGCTGACGCTCGTTCT    >  1:621654/1‑236                                                                                                                                                                                                                                        CAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAGGGTGGCCTTTTCCTGATCCATACGGGCAATCAGCGGCTGGCTCTGCTGCAGGAAGCGCTGACGCTCGTTCT    >  1:699251/1‑236                                                                                                                                                                                                                                        CAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAGGGTGGCCTTTTCCTGATCCATACGGGCAATCAGCGGCTGGCTCTGCTGCAGGAAGCGCTGACGCTCGTTCT    >  1:773743/1‑236                                                                                                                                                                                                                                        CAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAGGGTGGCCTTTTCCTGATCCATACGGGCAATCAGCGGCTGGCTCTGCTGCAGGAAGCGCTGACGCTCGTTCT    >  1:976712/1‑236                                                                                                                                                                                                                                        CAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAGGGTGGCCTTTTCC                                                              >  2:1015114/1‑178                                                                                                                                                                                                                                        CAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCG                                                                                                          >  2:1098317/1‑134                                                                                                                                                                                                                                          GCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAGGGTGGCCTTTTCCTGATCCATACGGGCAATCAGCGGCTGGCTCTGCTGCAGGAAGCGCTGACGCTCGTTCTTG  >  1:649384/1‑236                                                                                                                                                                                                                                          GCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAGGGTGGCCTTTTCCTGATCCATACGGGCAATCAGCGGCTGGCTCTGCTGCAGGA                      >  1:594792/1‑216                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CACCCTGCTCGCAGCGAACAAGCGCTAAGCCATGGCGCTCTACTTGGGGGTGATGTCCGGCACCAGCCTCGATGGCCTGGATATCGCCCTGGTCGAACAAGGCGAGCAGCTTGAACTGCTCGCCACCCACTACCTGCCCATGCCCCCGGACCTGCGCCAGGACCTGCTGGCCCTGTGCAGCAGCGGCCCTGACGAGATTGCCCGTGCAGCACTGGCGGAAAACCGCTGGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/521326‑521092 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccagcAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCTGGTGCCGGACATCACCCCCAAGTAGAGCGCCATGGCTTAGCGCTTGTTCGCTGCGAGCAGGGTGGCCTTTTCCTGATCCATACGGGCAATCAGCGGCTGGCTCTGCTGCAGGAAGCGCTGACGCTCGTTCTTG  >  AE015451/521162‑521395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.