New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 728937	64 (1.030)	5 (0.080)	5/330	NT	7.4%	coding (426/963 nt)	rluD	23S rRNA pseudouridine(1911,1915,1917) synthase
	?	AE015451	= 728945	64 (1.080)					coding (434/963 nt)	rluD	23S rRNA pseudouridine(1911,1915,1917) synthase

TGGATCGCAGAAGATATCGAACTGGATATCGTCTACGAAGACGACCACATCCTGGTGATCAACAAGCCTGCCGGGCTGGTTGTGCACCCGGCGGCCGGGCATGCCAGCGGCACCCTGCTCAACGCGCTGCTGCACCATGTGCCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/728737‑728937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccaccATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCAGCAGCGCGTTGAGCAGGGTGCCGCTGGCATGCCCGGCCGCCGGGTGCACAACCAGCCCGGCAGGCTTGTTGATCACCAGGATGTGGTCGTCTTCGTAGACGATATCCAGTTCGATATCTTCTGCGATCCACTCGCCCTGGGCCTCTTGTTCGGCCT  <  AE015451/728945‑728711                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGGATCGCAGAAGATATCGAACTGGATATCGTCTACGAAGACGACCACATCCTGGTGATCAACAAGCCTGCCGGGCTGGTTGTGCACCCGGCGGCCGGGCATGCCAGCGGCACCCTGCTCAACGCGCTGCTGCACCATGTGCCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACAC                                                                                                                                                                                                                                                 <  2:1068674/197‑1                                  TACGAAGACGACCACATCCTGGTGATCAACAAGCCTGCCGGGCTGGTTGTGCACCCGGCGGCCGGGCATGCCAGCGGCACCCTGCTCAACGCGCTGCTGCACCATGTGCCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCAC                                                                                                                                                                                                                                              <  1:203957/167‑1                                                                                                                                   TGCACCATGTGCCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACCATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTGTGGCACtt                                                                                                                                                                    >  1:802768/1‑142                                                                                                                                             GCCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACCATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCAGCAGCGCGTTGAGCAGGGTGCCGCTGGCGTGCCCGGCCGCCGGGTGCACAACCAGCCCGGCAGGCTTGTTGATCACCAGGATGTGGTCGTCTTCG                                                               >  1:394612/1‑235                                                                                                                                                         CAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACCATCAGGCCGGTGGTGTCCTTGTCACGGCGGTGCACGATCCCGGCGCGCGGCACGTTGACGATGTCTGTCACATGGTGCAGCAGCGCGTTGAGC                                                                                                                                                >  2:988784/1‑142                                                                                                                                                                        CGGTATCGTGCACGGCCTGGACAAGGACACCACCATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCA                                                                                                                                                              >  1:599556/1‑113                                                                                                                                                                        CGGTATCGTGCACCGCCTGGACAAGGACACCACCATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCA                                                                                                                                                              <  2:599555/113‑1                                                                                                                                                                                                     CCACCATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCAGCAGCGCGTTGAGCAGGGTGCCGCTGGCATGCCCGGCCGCCGGGTGCACAACCAGCCCGGCAGGCTTGTTGATC                                                                                    <  2:864105/158‑1                                                                                                                                                                                                       ACCATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCAGCAGCGCGTTGAGCAGGGTGCCGCTGGCATGCCCGGCCGCCGGGTGCACAACCAGCCCGGCAGGCTTGTTGATCACCAGGATGTGGTCGTCTTCGTAGACGATATCCAGTTCGATATCTTCTGCGATCCACTCGCCCTGGGCCTCTTGTTCGGC    >  1:958331/1‑236                                                                                                                                                                                                         CATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCAGCAGCGCGTTGAGCAGGGTGCCGCTGGCATGCCCGGCCGCCGGGTGCACAACCAGCCCGGCAGGCTTGTTGATCACCAGGATGTGGTCGTCTTCGTAGACGATATCCAGTTCGATATCTTCTGCGATCCACTCGCCCTGGGCCTCTTGTTCGGCCT  >  1:1017530/1‑236                                                                                                                                                                                                         CATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCAGCAGCGCGTTGAGCAGGGTGCCGCTGGCATGCCCGGCCGCCGGGTGCACAACCAGCCCGGCAGGCTTGTTGATCACCAGGATGTGGTCGTCTTCGTAGACGATATCCAGTTCGATATCTTCTGCGATCCACTCGCCCTGGGCCTCTTGTTCGGCCT  >  1:319278/1‑236                                                                                                                                                                                                         CATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCAGCAGCGCGTTGAGCAGGGTGCCGCTGGCATGCCCGGCCGCCGGGTGCACAACCAGCCCGGCAGGCTTGTTGATCACCAGGATGTGGTCGTCTTCGTAGACGATATCCAGTTCGATATCTTCTGCGATCCA                            >  2:719267/1‑210                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGGATCGCAGAAGATATCGAACTGGATATCGTCTACGAAGACGACCACATCCTGGTGATCAACAAGCCTGCCGGGCTGGTTGTGCACCCGGCGGCCGGGCATGCCAGCGGCACCCTGCTCAACGCGCTGCTGCACCATGTGCCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/728737‑728937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccaccATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCAGCAGCGCGTTGAGCAGGGTGCCGCTGGCATGCCCGGCCGCCGGGTGCACAACCAGCCCGGCAGGCTTGTTGATCACCAGGATGTGGTCGTCTTCGTAGACGATATCCAGTTCGATATCTTCTGCGATCCACTCGCCCTGGGCCTCTTGTTCGGCCT  <  AE015451/728945‑728711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.