New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 923303	60 (0.970)	4 (0.070)	4/318	NT	6.6%	coding (1890/2169 nt)	PP_0804	Protein secretion ABC efflux system, permease and ATP‑binding protein
	?	AE015451	= 923379	58 (1.010)					coding (1814/2169 nt)	PP_0804	Protein secretion ABC efflux system, permease and ATP‑binding protein

ATCGCGCGCGTCATCGATGACGATGCGCCCGGCGTCCAGCACCAGGATGCGGTCGACCCGCTGCAGAACACTCAGGCGATGGGTTGCGATCACCAGTGTACGGCCCTGACAGAAGCGCTCCAGGTTATCCAGCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/923060‑923303 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggccgccaCTGGCGCACTGGACTTCGTCCGCCGCCTGCCCAAGGGCATGGACCACTTGATCCTCGAAGGAGGCCTGGGCTTGTCTGGCGGCCAGCGCCAAGCCCTGGTGCTGTCGCGCCTGCTGGTACGCCAGCCGCAGGTGCTGTTGCTGGACGAGCCGACCGCGTCGCTGGACGACATGACCGAGCGCAAGCTGCTGGATAACCTGGAGCGCTTCTGTCAGGGCCGTACAC  <  AE015451/923379‑923155                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATCGCGCGCGTCATCGATGACGATGCGCCCGGCGTCCAGCACCAGGATGCGGTCGACCCGCTGCAGAACACTCAGGCGATGGGTTGCGATCACCAGTGTACGGCCCTGACAGAAGCGCTCCAGGTTATCCAGCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGC                                                                                                                                                                                                                                              <  2:512608/233‑1                           GCCCGGCGTCCAGCACCAGGATGCGGTCGACCCGCTGCAGAACACTCAGGCGATGGGTTGCGATCACCAGTGTACGGCCCTGACAGAAGCGCTCCAGGTTATCCAGCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGCCtggccgg                                                                                                                                                                                                                                >  1:788439/1‑214                                              GATGCGGTCGACCCGCTGCAGAACACTCAGGCGATGGGTTGCGATCACCAGTGTACGGCCCTGACAGAAGCGCTCCAGGTTATCCAGCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGC                                                                                                                                                                                                                                        <  2:416731/194‑1                                                           CGCTGCAGAACACTCAGGCGATGGGTTGCGATCACCAGTGTACGGCCCTGACAGAAGCGCTCCAGGTTATCCAGCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGCCGCCA                                                                                                                                                                                                                                   <  2:755745/186‑1                                                           CGCTGCAGAACACTCAGGCGATGGGTTGCGATCACCAGTGTACGGCCCTGACAGAAGCGCTCCAGGTTATCCAGCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGCCGCCA                                                                                                                                                                                                                                   >  1:755746/1‑186                                                           CGCTGCAGAACACTCAGGCGATGGGTTGCGATCACCAGTGTACGGCCCTGACAGAAGCGCTCCAGGTTATCCAGCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGCCGCC                                                                                                                                                                                                                                    <  2:412025/185‑1                                                           CGCTGCAGAACACTCAGGCGATGGGTTGCGATCACCAGTGTACGGCCCTGACAGAAGCGCTCCAGGTTATCCAGCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGCCGC                                                                                                                                                                                                                                     >  1:53174/1‑184                                                                 AGACCACTCAGGCGATGGGTTGCGATCACCAGTGTACGGCCCTGACAGAAGCGCTCCAGGTTATCCAGCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGCC                                                                                                                                                                                                                                       <  1:363739/176‑1                                                                                                                     GCTCCAGGTTATCCAGCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACCGCACCAGGGCTTGGC                                                                                                                                                                                                                                              >  2:102120/1‑117                                                                                                                                    GCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGCCGCCACTGGCGCACTGGACTTCGTCCGCCGCCTGCCCAAGGGCATGGACCACTTGATCCTCGAAGGAGGCCTGGGCTTGTCTGGCGGCCAGCG                                                                                                                                           >  2:743447/1‑201                                                                                                                                    GCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGCCGCCACTGGCGCACTGGACTTCGTCCGCCGCCTGCCCAAGGGCATGGACCACTTGATCCTCGAAGGAGGCCTGGGCTTGTCTGGCGGCCAGCG                                                                                                                                           <  1:743448/201‑1                                                                                                                                                         CGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGGACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGCCGCCACTGGCGCACTGGACTTCGTCCGCCGCCTGCCCAAGGGCATGGACCACTTGATCCTCGAAGGA                                                                                                                                                                     <  2:7039/154‑1                                                                                                                                                                                                   GCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGC                                                                                                                                                                                                                                        <  2:882462/45‑1                                                                                                                                                                                                                                AGGGCTTGGCGCTGGCCGCCACTGGCGCACTGGACTTCGTCCGCCGCCTGCCCAAGGGCATGGACCACTTGATCCTCGAAGGAGGCCTGGGCTTGTCTGGCGGCCAGCGCCAAGCCCTGGT‑‑TGTCGCGCCTGCTGGTACGCCAGCCGCAGGTGCTGTTGCTGGACGAGCCGACCGCGTCGCTGGACGA                                                          >  2:600509/1‑188                                                                                                                                                                                                                                          GCTGGCCGCCACTGGCGCACTGGACTTCGTCCGCCGCCTGCCCAAGGGCATGGACCACTTGATCCTCGAAGGAGGCCTGGGCTTGTCTGGCGGCCAGCGCCAAGCCCTGGTGCTGTCGCGCCTGCTGGTACGCCAGCCGCAGGTGCTGTTGCTGGACGAGCCGACCGCGTCGCTGGACGACATGACCGAGCGCAAGCTGCTGGATAACCTGGAGCGCTTCTGTCAGGGCCGTACAC  >  1:881155/1‑236                                                                                                                                                                                                                                            ggcCCGCCACTGGCGCACTGGACTTCGTCCGCCGCCTGCCCAAGGGCATGGACCACTTGATCCTCGAAGGAGGCCTGGGCTTGTCTGGCGGCCAGCGCAAAGCCCTGGTGCTGTCGCGCCTGCTGGTACGCCAGCCGCAGGTGCTGTTGCTGGACGAGCCGACCGCGTCGCTGGACGACATGACCGAGCGCAAGCTGCTGGATAACCTGGAGCGCTTCTGTCA             <  1:206804/220‑1                                                                                                                                                                                                                                             GGCCGCCACTGGCGCACTGGACTTCGTCCGCCGCCTGCCCAAGGGCATGGACCACTTGATCCTCGAAGGAGGCCTGGGCTTGTCTGGCGGCCAGCGCCAAGCCCTGGTGCTGTCGCGCCTGCTGGTACGCCAGCCGCAGGTGCTGTTGCTGGACGAGCCGACCGCGTCGCTGGACGACATGACCGAGCGCAAGCTGCTGGATA                                >  1:872106/1‑203                                                                                                                                                                                                                                             GGCCGCCACTGGCGCACTGGACTTCGTCCGCCGCCTGCCCAAGGGCATGGACCACTTGATCCTCGAAGGAGGCCTGGGCTTGTCTGGCGGCCAGCGCCAAGCCCTGGTGCTGTCGCGCCTGCTGGTACGCCAGCCGCAGGTGCTGTTGCTGGACGAGCCGACCGCGTCGCTGGA                                                             >  1:757416/1‑174                                                                                                                                                                                                                                                    ACTGGCGCACTGGACTTCGTCCGCCGCCTGCCCAAGGGCATGGACCACTTGATCCTCGAAGGAGGCCTGGGCTTGTCTGGCGGCCAGCGCCAAGCCCTGGTGCTGTCGCGCCTGCTGGTACGCCAGCCGCAGGTGCTGTTGCTGGACGAGCCGACCGCGTCGCTGGACGACATGACCGAGCGCAAGCTGCTGGATAACCT                            <  2:689712/200‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATCGCGCGCGTCATCGATGACGATGCGCCCGGCGTCCAGCACCAGGATGCGGTCGACCCGCTGCAGAACACTCAGGCGATGGGTTGCGATCACCAGTGTACGGCCCTGACAGAAGCGCTCCAGGTTATCCAGCAGCTTGCGCTCGGTCATGTCGTCCAGCGACGCGGTCGGCTCGTCCAGCAACAGCACCTGCGGCTGGCGTACCAGCAGGCGCGACAGCACCAGGGCTTGGCGCTGGCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/923060‑923303 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggccgccaCTGGCGCACTGGACTTCGTCCGCCGCCTGCCCAAGGGCATGGACCACTTGATCCTCGAAGGAGGCCTGGGCTTGTCTGGCGGCCAGCGCCAAGCCCTGGTGCTGTCGCGCCTGCTGGTACGCCAGCCGCAGGTGCTGTTGCTGGACGAGCCGACCGCGTCGCTGGACGACATGACCGAGCGCAAGCTGCTGGATAACCTGGAGCGCTTCTGTCAGGGCCGTACAC  <  AE015451/923379‑923155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.