New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 1039478 | 61 (0.990) | 8 (0.140) | 7/312 | NT | 12.7% | intergenic (‑84/‑166) | PP_0897/PP_0899 | Fumarate hydratase, class I/putative Ferredoxin reductase |
? | AE015451 | = 1039462 | 55 (0.980) | intergenic (‑68/‑182) | PP_0897/PP_0899 | Fumarate hydratase, class I/putative Ferredoxin reductase |
CGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/1039250‑1039478 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccttgcaaggcgcTTCGACGTGCTGGTCGGCTATGTCGAGCGTCTTTTTGAATGTTCCCGTCTTTAAGAGGAGCGCGCTGCATGACCGTGATCAAGCAAGACGACCTGATTCAGAGCGTCGCCGACGCCCTGCAATTCATCTCGTACTACCACCCCGTCGATTTCATCCAGGCCATGCACGAGGCCTATCTGCGTGAGGAATCGCCTGCTGCACGCGATT < AE015451/1039462‑1039256 CGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGC > 2:241680/1‑227 TGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGCTTCGACGTG < 1:989115/178‑1 TGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGCTTCGACGTG > 2:989114/1‑178 ACGGGTTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGCTTCGACGTGCTGGTCGGCTATGTCGAGCGTCTTTTTGAATG < 1:162102/202‑1 GGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGCTTCGACGTG < 2:990111/167‑1 GAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGCTTCGACGTGCTGGTCGGCTATGTCGAGCGTCTTTTTGAATGTTC < 2:1056813/159‑1 TCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGGCGACCAGCACGTCGAAGCGCCT < 2:143823/102‑1 AGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGCTTCGACGTGCTGGTCGGCTATGTCGAGCGTCTTTTTGAATGTTCCCGTCTTTAAGAGGAGCGCGCTGCATGACCGTGATCAAGCAAGACGACCTGATTCAGAGCGTCGCCGACGCCCTGCA > 1:884821/1‑203 AGCACGTCGAAGCGCCTTGCAAGGCGCTTCGACGTGCTGGTCGGCTATGTCGAGCGTCTTTTTGAATGTTCCCGTCTTTAAGAGGAGCGCGCTGCATGACCGTGATCAAGCAAGACGACCTGATTCAGAGCGTCGCCGACGCCCTGCAATTCATCTCGTACTACCACCCCGT > 1:1083953/1‑172 CACGTCGAAGCGCCTTGCAAGGCGCTTCGACGTGCTGGTCGGCTATGTCGAGCGTCTTTTTGAATGTTCCCGTCTTTAAGAGGAGCGCGCTGCATGACCGTGATCAAGCAAGACGACCTGATTCAGAGCGTCGACGACGCCCTGCAATTCATATCGTACTACCACCCCGTCGATTTCATCCAGGCCATGCACGAGGCCTATCTGCGTGAGGAATCGCCTGCTGCACGCGATT > 1:1072989/1‑232 CGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/1039250‑1039478 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccttgcaaggcgcTTCGACGTGCTGGTCGGCTATGTCGAGCGTCTTTTTGAATGTTCCCGTCTTTAAGAGGAGCGCGCTGCATGACCGTGATCAAGCAAGACGACCTGATTCAGAGCGTCGCCGACGCCCTGCAATTCATCTCGTACTACCACCCCGTCGATTTCATCCAGGCCATGCACGAGGCCTATCTGCGTGAGGAATCGCCTGCTGCACGCGATT < AE015451/1039462‑1039256 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |