| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 1094944 = | 60 (0.970) | 6 (0.100) | 5/326 | NT | 9.2% | coding (1117/1494 nt) | rpoN | RNA polymerase sigma‑54 factor |
| ? | AE015451 | 1095025 = | 62 (1.060) | coding (1036/1494 nt) | rpoN | RNA polymerase sigma‑54 factor | |||||
GCCCGACGTCATCGTGCGCAAGGACAGCGACCGTTGGCTGGTAGAACTGAACCAGGAAGCCATCCCACGCCTGCGCGTCAACCCACAATACGCCGGCTTCGTGCGCCGTGCCGACACCAGCGCCGACAACACCTTCATGCGCAACCAGCTGCAGGAAGCGCGCTGGTTCATCAAGAGCCTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCAGCGC‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1095182‑1094944‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcgc‑gCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCGGCGCTGGTGTCGGCACGGCGCACGAAGCCGGCGTATTGTGGGTTGACGCGCAGGCGTGGGATGGCTTCCTGGTTCAGTTCTACCAGCCAACGGTCGCTGTCCTTGCGCACGATGACGTCGGGCACCACGTACTCGGGCTCGCTGGACTCGATCTGCGAACCAGGGCGCGGGTTAAGGCTTTGCACCAGTTCGATGAC > AE015451/1095025‑1095256 GCCCGACGTCATCGTGCGCAAGGACAGCGACCGTTGGCTGGTAGAACTGAACCAGGAAGCCATCCCACGCCTGCGCGTCAACCCACAATACGCCGGCTTCGTGCGCCGTGCCGACACCAGCGCCGACAACACCTTCATGCGCAACCAGCTGCAGGAAGCGCGCTGGTTCATCAAGAGCCTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCA > 1:859785/1‑234 CATCGTGCGCAAGGACAGCGACCGTTGGCTGGTAGAACTGAACCAGGAAGCCATCCCACGCCTGCGCGTCAACCCACAATACGCCGGCTTCGTGCGCCGTGCCGACACCAGCGCCGACAACACCTTCATGCGCAACCAGCTGCAGGAAGCGCGCTGGTTCATCAAGAGCCTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCAGCG > 1:413885/1‑228 CGTGCGCAAGGACAGCGACCGTTGGCTGGTAGAACTGAACCAGGAAGCCATCCCACGCCTGCGCGTCAACCCACAATACGCCGGCTTCGTGCGCCGTGCCGACACCAGCGCCGACAACACCTTCATGCGCAACCAGCTGCAGGAAGCGCGCTGGTTCATCAAGAGCCTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCAGC > 1:465837/1‑224 cGGCTGGTAGAACTGAACCAGGAAGCCATCCCACGCCTGCGCGTCAACCCCCACTACGCCGGCTTCGTGCGCCGTGCCGACACCAGCGCCGACAACACCTTCATGCGCAACCAGCTGCAGGAAGCGCGCTGGTTCATCAAGAGCCTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCAGC < 2:898167/201‑1 CCAGGAAGCCATCCCACGCCTGCGCGTCAACCCACAATACGCCGGCTTCGTGCGCCGTGCCGACACCAGCGCCGACAACACCTTCATGCGCAACCAGCTGCAGGAAGCGCGCTGGTTCATCAAGAGCCTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCAGCGC > 2:463011/1‑187 CTGCGCGTCAACCCACAATACGCCGGCTTCGTGCGCCGTGCCGACACCAGCGCCGACAACACCTTCATGCGCAACCAGCTGCAGGAAGCGCGCTGGTTCATCAAGAGCCTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCAGCGC‑GCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCGG < 2:956997/205‑1 ACGCCGGCTTCGTGCGCCGTGCCGACACCAGCGCCGACAACACCTTCATGCGCAACCAGCTGCAGGAAGCGCGCTGGTTCATCAAGAGCCTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCAGCGC‑GCTTCCTGCAGCTG < 2:753458/163‑1 CGACACCAGCGCCGACAACACCTTCATGCGCAACCAGCTGCAGGAAGCGCGCTGGTTCATCAAGAGCCTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCA > 2:1084368/1‑123 CAGCGGCAGGCAGCGCGCTGGTTCATCAAGAGCCTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCAGCGCGGCTTCCTGCAGCTG < 2:112527/108‑1 CTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCAGCGC‑GCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCG < 1:242373/96‑1 CTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCAGCGC‑GCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCG > 2:242372/1‑96 AAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGCCGAGCACCAGCGC‑GCGTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCGGCGCTGGTGTCGGCACGGCGCACGAAG < 1:1067053/118‑1 GCGC‑GCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCGGCGCTGGTGTCGGCACGGCGCACGAAGCCGGCGTATTGTGGGTTGACGCGCAGGCGTGGGATGGCTTCCTGGTTCAGTTCTACCAGCCAACGGTCGCTGTCCTTGCGCACGATGACGTCGGGCACCACGTACTCGGGCTCGCTGGACTCGATCTGCGAACCAGGGCGCGGGTTAAGGCTTTGCACCAGTTCGATGA > 1:582084/1‑236 GC‑GCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCGGCGCTGGTGTCGGCACGGCGCACGAAGCCGGCGTATTGTGGGTTGACGCGCAGGCGTGGGATGGCTTCCTGGTTCAGTTCTACCAGCCAACGGTCGCTGTCCTTGCGCACGATGACGTCGGGCACCACGGACTCGGGCTCGCTGGACTCGATCTGCGAACCAGGGCGCGGGTTAAGGCGTTGCACCAGTTCGATGcc > 1:185540/1‑233 GC‑GCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCGGCGCTGGTGTCGGCACGGCGCACGAAGCCGGCGTATTGTGGGTTGACGCGCAGGCGTG < 2:1114731/96‑1 GC‑GCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCGGCGCTGGTGTCGGCACGGCGCACGAAGCCGGCGTATTGTGGGTTGACGCGCAGGCGTG > 1:1114732/1‑96 GCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCGGCGCTGGTGTCGGCACGGCGCACGAAGCCGGCGTATTGTGGGTTGACGCGCAGGCGTGGGATGGCTTCCTGGTTCAGTTCTACCAGCCAACGGTCGCTGTCCTTGCGCACGATGACGTCGGGCACCACGTACTCGGGCTCGCTGGACTCGATCTGCGAACCAGGGCGCGGGT > 2:296724/1‑208 GCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCGGCGCTGGTGTCGGCACGGCGCACGAAGCCGGCGTATTGTGGGTTGACGCGCAGGCGTGGGATGGCTTCCTGGTTCAGTTCTACCAGCCAACGGTCGCTGTCCTTGCGCACGATGACGTCGGGCACCACGTACTCGGGCTCGCTG > 2:570316/1‑180 GCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCGGCGCTGGTGTCGGCACGGCGCACGAAGCCGGCGTATTGTGGGTTGACGCGCAGGCGTGGGATGGCTTCCTGGTTCAGTTCTACCA < 2:447972/121‑1 GCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCGGCGCTGGTGTCGGCACGGCGCACGAAGCCGGCGTATTGTGGGTTGACGCGCAGGCGTGGGATGGCTTCCTGGTTCAGTTCTACCA > 1:447973/1‑121 GCCCGACGTCATCGTGCGCAAGGACAGCGACCGTTGGCTGGTAGAACTGAACCAGGAAGCCATCCCACGCCTGCGCGTCAACCCACAATACGCCGGCTTCGTGCGCCGTGCCGACACCAGCGCCGACAACACCTTCATGCGCAACCAGCTGCAGGAAGCGCGCTGGTTCATCAAGAGCCTGCAAAGCCGTAACGAAACCCTGATGAAGGTTGCCACGCAGATCGTCGAGCACCAGCGC‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1095182‑1094944‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcgc‑gCTTCCTGCAGCTGGTTGCGCATGAAGGTGTTGTCGGCGCTGGTGTCGGCACGGCGCACGAAGCCGGCGTATTGTGGGTTGACGCGCAGGCGTGGGATGGCTTCCTGGTTCAGTTCTACCAGCCAACGGTCGCTGTCCTTGCGCACGATGACGTCGGGCACCACGTACTCGGGCTCGCTGGACTCGATCTGCGAACCAGGGCGCGGGTTAAGGCTTTGCACCAGTTCGATGAC > AE015451/1095025‑1095256 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |