New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 167236646 (0.740)6 (0.100) 6/324 NT 12.6% coding (523/1806 nt) PP_1467 NhaP‑type Na+(K+)/H+ antiporter
?AE015451 = 1672526 40 (0.690)coding (363/1806 nt) PP_1467 NhaP‑type Na+(K+)/H+ antiporter

ACATGCCCATCACGGTCACGGCAAGTAGCCCGGACTCGTGCATGATCTGGTTGGCGGCGATGAATATCCCCAGTACCGCCGCCAGTGACGCGAGGTTGTGCAGATACTCTGGTAGCCACTGTTCGCGCATGATTTGCCCCAGCAGCCAGCCCCCCGCCGCGCCCAGGGTGGTGCCGCAGAAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1672126‑1672366
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctggcgatTCTTTTCGGCACCTTGACCCTGGTGACCGGCCCCACGGTGATCGTGCCCATGCTGCGCGTGGTGCGGCCAAAGGCAGCGATCGCGAACATCCTGCGTTGGGAAGGGATCATGATCGACCCGATCGGCGCGCTGCTCGCCGTGGTGGTCTACAGCTTCATCATCGCCAGCGCCGAGGGTAACGGCCTGAGCCAGAGCCTCATCACCTTCGCCGGTGTGCTCTT  <  AE015451/1672526‑1672305
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
ACATGCCCATCACGGTCACGGCAAGTAGCCCGGACTCGTGCATGATCTGGTTGGCGGCGATGAATATCCCCAGTACCGCCGCCAGTGACGCGAGGTTGTGCAGATACTCTGGTAGCCACTGTTCGCGCATGATTTGCCCCAGCAGCCAGCCCCCCGCCGCGCCCAGGGTGGTGCCGCAGAAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCG                                                                                                                                                                                                                                        >  2:1108355/1‑233
  ATGCCCATCACGGTCACGGCAAGTAGCCCGGACTCGTGCATGATCTGGTTGGCGGCGATGAATATCCCCAGTACCGCCGCCAGTGACGCGAGGTTGTGCAGATACTCTGGTAGCCACTGTTCGCGCATGATTTGCCCCAGCAGCCAGCCCCCCGCCGCGCCCAGGGTGGTGCCGCAGAAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCT                                                                                                                                                                                                                                      <  2:608515/233‑1
     CCCATCACGGTCACGGCAAGTAGCCCGGACTCGTGCATGATCTGGTTGGCGGCGATGAATATCCCCAGTACCGCCGCCAGTGACGCGAGGTTGTGCAGATACTCTGGTAGCCACTGTTCGCGCATGATTTGCCCCAGCAGCCAGCCCCCCGCCGCGCCCAGGGTGGTGCCGCAGAAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGA                                                                                                                                                                                                                                 <  1:975214/235‑1
                                                                           CCGCCGCCAGTGACGCGAGGTTGTGCAGATACTCTGGTAGCCACTGTTCGCGCATGATTTGCCCTAGCAGCCAGCCCCCCGCCGCGCCCAGGGTGGTGCCGCAGAAGAGCAGACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTGCCCTCGGCGCT                                                                                                                                                                                                                                      >  2:773162/1‑160
                                                                                                     AGATACTCTGGTAGCCACTGTCCGCGCATGATTTGCCCCAGCAGCCAGCCCCCCGCCGCGCCCAGGGTGGTGCCGCAGAAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGATTCTTTTCGGCACCTTGACCCTGGTGACCGGCCCCACGGT                                                                                                                                                                                         <  1:117909/179‑1
                                                                                                                                                                  CCAGGGTGGTGCCGCAGAAGAGCACACCGGCGAAGGGGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGATTCTTTTCGGCACCTTGACCCTGGTGACCGGCCCCACG                                                                                                                                                                                           >  1:185269/1‑116
                                                                                                                                                                                 AGAAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGATTCTTTTCGGCACCTTGACCCTGGTGA                                                                                                                                                                                                      <  1:4060/90‑1
                                                                                                                                                                                 AGAAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGATTCTTTTCGGCACCTTGACCCTGGTGA                                                                                                                                                                                                      >  2:4060/1‑90
                                                                                                                                                                                   AAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGA                                                                                                                                                                                                                                 >  1:511888/1‑61
                                                                                                                                                                                   AAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGA                                                                                                                                                                                                                                 <  2:511887/61‑1
                                                                                                                                                                                                                          CCGTTACCCTCGGCGCTGGCGATTCTTTTCGGCACCTTGACCCTGGTGACCGGCCCCACGGTGATCGTGCCCATGCTGCGCGTGGTGCGGCCAAAGGCAGCGATCGCGAACATCCTGCGTTGGGAAGGGATCATGATCGACCCGATCGGCGCGCTGCTCGCCGTGGTGGTCTACAGCTTCATCATCGCCAGCGCCGAGGGTAACGGCCTGAGCCAGAGCCTCATCACCTTCGCCG            >  1:897899/1‑235
                                                                                                                                                                                                                                 CCTCGGCGCTGGCGATTCTTTTCGGCACCTTGACCCTGGTGACCGGCCCCACGGTGATCGTGCCCATGCTGCGCGTGGTGCGGCCAAAGGCAGCGATCGCGAACATCCTGCGTTGGGAAGGGATCATGATCGACCCGCTCGGCGCGCTGCTCGCCGTGGGGGGCTACAGCGTCATCCTCGCCgg                                                        >  2:208962/1‑182
                                                                                                                                                                                                                                   TCGGCGCTGGCGATTCTTTTCGGCACCTTGCCCCTGGTGACCGGCCCCACGGTGATCGTGCCCATGCTGCGCGTGGTGCGGCCAAAGGCAGCGATCGCGAACATCCTGCGTTGGGAAGGGATCATGATCGACCCGATCGGCGCGCTGCTCGCCGTGGTGGTCTACAGCTTCATCATCGCCAGCGCCGAGGGTAACGGCCTGAGCCAGAGCCTCATCACCTTCGCCGGTGTGCTCTT  <  1:208962/236‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
ACATGCCCATCACGGTCACGGCAAGTAGCCCGGACTCGTGCATGATCTGGTTGGCGGCGATGAATATCCCCAGTACCGCCGCCAGTGACGCGAGGTTGTGCAGATACTCTGGTAGCCACTGTTCGCGCATGATTTGCCCCAGCAGCCAGCCCCCCGCCGCGCCCAGGGTGGTGCCGCAGAAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1672126‑1672366
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctggcgatTCTTTTCGGCACCTTGACCCTGGTGACCGGCCCCACGGTGATCGTGCCCATGCTGCGCGTGGTGCGGCCAAAGGCAGCGATCGCGAACATCCTGCGTTGGGAAGGGATCATGATCGACCCGATCGGCGCGCTGCTCGCCGTGGTGGTCTACAGCTTCATCATCGCCAGCGCCGAGGGTAACGGCCTGAGCCAGAGCCTCATCACCTTCGCCGGTGTGCTCTT  <  AE015451/1672526‑1672305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.