New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2719525	57 (0.920)	3 (0.050)	3/330	NT	5.2%	intergenic (+67/‑130)	nfuA/PP_2379	Fe/S biogenesis protein NfuA/putative cytochrome oxidase biogenesis protein
	?	AE015451	= 2719534	55 (0.930)					intergenic (+76/‑121)	nfuA/PP_2379	Fe/S biogenesis protein NfuA/putative cytochrome oxidase biogenesis protein

GACGGCATTGCCGTACTGCAGTTCGGTGGTGGCTGCCAGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2719294‑2719525 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcccTTTGAATACGGGCTGCGGCCTGTTGTCGCAGGGGTTGAAACCGTAACACTTTGTTGCTAAGGGAGCCGCCTTCAACTCAGTAGTAGGCGTTTTCTTTCTGGCTGTGGTCAGTCACGTCGCGCACGCCCTTCAGCTCCGGAATACGCTCGAGCAGGGTGCGCTCGATGCCTTCCTTCAGGGTGACATCGGCCTGGCCGCAACCCTGGCAGCCACCACCGAACTGCAGTACGGCA  <  AE015451/2719534‑2719302                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GACGGCATTGCCGTACTGCAGTTCGGTGGTGGCTGCCAGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAG                                                                                                                                                                                                                                              <  1:203597/229‑1         TGCCGTACTGCAGTTCGGTGGTGGCTGCCAGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGC                                                                                                                                                                                                                                             >  2:811927/1‑222                              TGGCTGCCAGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCC                                                                                                                                                                                                                                           >  2:524947/1‑203                                                                                     cCCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCTTTGAATACGGGCTGCGGCCTGTTGTCGCAGGGGTTGAAACCGTAACAC                                                                                                                                                                                          <  1:415130/196‑1                                                                                                                                                                        TGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCTTTGAATACGGGCTGCGGCCTGTTGTCGCAGGGGTTGAAACCGTAACACTTTGTTGCTAAGGGAGCCGCCTTCAACTCAGTAGTAGGCGTTTTCTTTCTGGCTGTGGTCAGTCACGTCGCGCACGCCCTTCAGCTCCGGAACACGCTCGAGCAGGGTGCGCGCGATGCC                                                                  >  1:118451/1‑234                                                                                                                                                                                    CCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCTTTGAATACGGGCTGCGGCC                                                                                                                                                                                                                       >  1:936208/1‑73                                                                                                                                                                                                                                  GCAGCCCTTTGAATACGGGCTGCGGCCTGTTGTCGCAGGGGTTGAAACCGTAACACTTTGTTGCTAAGGGAGCCGCCTTCAACTCAGTAGTAGGCGTTTTCTTTCTGGCTGTGGTCAGTCACGTCGCGCACGCCCTTCAGCTCCGGAATACGCTCGAGCAGGGTGCGCTCGATGCCTTCCTTCAGGGTGACATCGGCCTGGCCGCAACCCTGGCAGCCACCACCGAACTGCAGTAC      <  1:1105810/236‑1                                                                                                                                                                                                                                    AGCCCTTTGAATACGGGCTGCGGCCTGTTGTCGCAGGGGTTGAAACCGTAACACTTTGTTGCTAAGGGAGCCGCCTTCAACTCAGTAGTAGGCGTTTTCTTTCTGGCTGTGGTCAGTCACGTCGCGCACGCCCTTCAGCTCCGGAATACGCTCGAGCAGGGTGCGCTCGATGCCTTC                                                               <  1:737772/177‑1                                                                                                                                                                                                                                    AGCCCTTTGAATACGGGCTGCGGCCTGTTGTCGCAGGGGTTGAAACCGTAACACTTTGTTGCTAAGGGAGCCGCCTTCAACTCAGTAGTAGGCGTTTTCTTTCTGGCTGTGGTCAGTCACGTCGCGCACGCCCTTCAGCTCCGGAATACGCTCGAGCAGG                                                                                <  1:836590/160‑1                                                                                                                                                                                                                                      CCCTTTGAATACGGGCTGCGGCCTGTTGTCGCAGGGGTTGAAACCGTAACACTTTGTTGCTAAGGGAGCCGCCTTCAACTCAGTAGTAGGCGTTTTCTTTCTGGCTGTGGTCAGTCACGTCGCGCACGCCCTTCAGCTCCGGAATACGCTCGAGCAGGGTGCGCTCGATGCCTTCCTTCAGGGTGACATCGGCCTGGCCGCAACCCTGGCAGCCACCACCGAACTGCAGTACGGCA  >  1:234154/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GACGGCATTGCCGTACTGCAGTTCGGTGGTGGCTGCCAGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2719294‑2719525 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcccTTTGAATACGGGCTGCGGCCTGTTGTCGCAGGGGTTGAAACCGTAACACTTTGTTGCTAAGGGAGCCGCCTTCAACTCAGTAGTAGGCGTTTTCTTTCTGGCTGTGGTCAGTCACGTCGCGCACGCCCTTCAGCTCCGGAATACGCTCGAGCAGGGTGCGCTCGATGCCTTCCTTCAGGGTGACATCGGCCTGGCCGCAACCCTGGCAGCCACCACCGAACTGCAGTACGGCA  <  AE015451/2719534‑2719302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.