New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2719525	57 (0.920)	3 (0.050)	3/330	NT	5.2%	intergenic (+67/‑130)	nfuA/PP_2379	Fe/S biogenesis protein NfuA/putative cytochrome oxidase biogenesis protein
	?	AE015451	= 2719534	55 (0.930)					intergenic (+76/‑121)	nfuA/PP_2379	Fe/S biogenesis protein NfuA/putative cytochrome oxidase biogenesis protein

TGCCGTACTGCAGTTCGGTGGTGGCTGCCAGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTAC  >  AE015451/2719302‑2719759                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                  tGCCGTACTGCAGTTCGGTGGTGGCTGCCAGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAggg                                                                                                                                                                                                                                >  1:234154‑M2/1‑233 (MQ=255)     gTACTGCAGTTCGGTGGTGGCTGCCAGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAgggctgc                                                                                                                                                                                                                            <  1:1105810‑M2/236‑8 (MQ=255)                cGGTGGTGGCTGCCAGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATccc                                                                                                                                                                                                                  >  1:579545/1‑235 (MQ=255)                   tggtggCTGCCAGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGAGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCAt                                                                                                                                                                                                                     >  2:195887/1‑229 (MQ=255)                      tggCTGCCAGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATg                                                                                                                                                                                                           >  1:872230/1‑236 (MQ=255)                              aGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCGCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTc                                                                                                                                                                                                        <  2:885814/231‑1 (MQ=255)                                       gCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCct                                                                                                                                                                                           <  1:1022097/235‑1 (MQ=255)                                        ccAGGCCGATGTCACCCTGAAGGAAGGCCTCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAAcccc                                                                                                                                                                                            <  2:838739/233‑1 (MQ=255)                                             ccGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTgg                                                                                                                                                                                       <  2:1105809/233‑1 (MQ=255)                                               gATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTc                                                                                                                                                                                  >  1:746517/1‑236 (MQ=255)                                                    cACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCCTGc                                                                                                                                                                              >  2:897485/1‑235 (MQ=255)                                                              gaaggCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAgggct                                                                                                                                                                                                                              <  1:737772‑M2/177‑6 (MQ=255)                                                              gaaggCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGcccc                                                                                                                                                                   >  1:962316/1‑236 (MQ=255)                                                                 ggCATCGCGCGCACCCTGCTCGAGCGTGTTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAgggctgcggcctgttgtcgcaggggttgaaaccgtaacactttgttgctaagggagccgccttca                                                                                                                                                                  >  1:118451‑M2/1‑169 (MQ=255)                                                                  gCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATcccc                                                                                                                                                                                                                 >  2:526805/1‑186 (MQ=255)                                                                           gcACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGAcc                                                                                                                                                       <  1:1088262/235‑1 (MQ=255)                                                                            cACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCg                                                                                                                                                                                                                <  1:848114/177‑1 (MQ=255)                                                                             aCCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCg                                                                                                                                                                                                                <  1:797328/176‑1 (MQ=255)                                                                               ccTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAgggct                                                                                                                                                                                                                              <  1:836590‑M2/160‑6 (MQ=255)                                                                               ccTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGAAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATccc                                                                                                                                                                                                                  >  2:117403/1‑172 (MQ=255)                                                                                     cGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGACGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCGGCGACAACAGGCCGCAGCCCGGATTCAAAGGGCTGCAGGCCAGccc                                                                                                                                                                                                                  >  2:114190/1‑166 (MQ=255)                                                                                      gAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTc                                                                                                                                               >  1:132621/1‑232 (MQ=255)                                                                                       aGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTgg                                                                                                                                                                                       <  2:49622/191‑1 (MQ=255)                                                                                         cGTATTCCGGAGCGGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTGCTGAGTTGAAGGCGGCCCCCTTAGCAACAAAGTGTTACGGTTTCACCCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGcc                                                                                                                                                                                                                       <  1:172187/157‑1 (MQ=255)                                                                                              tCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCgg                                                                                                                                    <  1:811928/235‑1 (MQ=255)                                                                                                cGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTc                                                                                                                                                           >  2:1098708/1‑210 (MQ=255)                                                                                                cGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGGGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATg                                                                                                                                                                                                           >  2:305809/1‑162 (MQ=255)                                                                                                           ggCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTaa                                                                                                                      >  1:1132246/1‑236 (MQ=255)                                                                                                           ggCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTaa                                                                                                                      <  1:542373/236‑1 (MQ=255)                                                                                                                gcgcGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAg                                                                                                                    <  1:325347/233‑1 (MQ=255)                                                                                                                  gcgACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCAccg                                                                                                                               >  1:16935/1‑219 (MQ=255)                                                                                                                       gTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGa                                                                                                                                                                                                 <  1:381763/149‑1 (MQ=255)                                                                                                                        tcactgacCACAGCCAGAAAGAAAACGCCTCCTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGcc                                                                                                                                      <  1:159469/205‑1 (MQ=255)                                                                                                                          actgacCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCatga                                                                                                       <  1:768861/236‑1 (MQ=255)                                                                                                                                        gaaagaaaACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGGCGGGCAGAACCCctct                                                                                                                                                                                         >  2:276159/1‑140 (MQ=255)                                                                                                                                                aCGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTg                                                                                  >  2:557454/1‑235 (MQ=255)                                                                                                                                                            gAGTTGAAGGCGGCTCCCCTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGc                                                                                     <  1:1232/220‑1 (MQ=255)                                                                                                                                                               ttGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGtt                                                                             <  1:524948/225‑1 (MQ=255)                                                                                                                                                                tGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTc                                                                                                           >  2:748747/1‑194 (MQ=255)                                                                                                                                                                     gcggcTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCa                                                                                                                                  >  1:474769/1‑166 (MQ=255)                                                                                                                                                                       ggcTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCatgca                                                                                                      >  1:523633/1‑190 (MQ=255)                                                                                                                                                                        gcTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCACGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTg                                                                            >  1:99145/1‑217 (MQ=255)                                                                                                                                                                            ccTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGTGCCGGCACCt                                                                                                                               >  2:181640/1‑162 (MQ=255)                                                                                                                                                                                      aaaGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATggg                                                               >  1:1060588/1‑216 (MQ=255)                                                                                                                                                                                         gtgtTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAgggctgcggcctgttgtcgcaggggttgaaaccgtaacactttgttgctaagggagccgccttcaactcagtagtaggcgttttctttctggctgtggtcagtcacgtcgcgcacgcccttcagctccggaatacgctcgagcagggg                                                                               <  1:415130‑M2/197‑149 (MQ=255)                                                                                                                                                                                         gtgtTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCg                                                                                       <  2:739612/189‑1 (MQ=255)                                                                                                                                                                                           gtTACGGTTTCAACCCCTGCGTCAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGc                                                                                 <  1:2155/193‑1 (MQ=255)                                                                                                                                                                                             tACGGTTTCAACCCCTGCGACAACAGGCAGCAGCCCGTATTCAAAGGGCTGCAGGCGATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGGTTCatgaatg                                                                                                    >  1:908981/1‑172 (MQ=255)                                                                                                                                                                                               cGGTTTCACCCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTgg                                                                                                                                                                                       <  2:188365/87‑1 (MQ=255)                                                                                                                                                                                                              cGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCggg                   <  1:918640/236‑1 (MQ=255)                                                                                                                                                                                                               gACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGa                                                                                           >  2:969508/1‑163 (MQ=255)                                                                                                                                                                                                                acaacaGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGc                                                                                                                                   <  1:409622/122‑1 (MQ=255)                                                                                                                                                                                                                 caacaGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGAt                                                                                                                 >  2:205019/1‑139 (MQ=255)                                                                                                                                                                                                                   acaGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCgg                                                                                                                                                     <  2:336167/101‑1 (MQ=255)                                                                                                                                                                                                                   acaGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCg                                                       <  1:71908/195‑1 (MQ=255)                                                                                                                                                                                                                     aGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCatga                                                                                                       <  2:463220/145‑1 (MQ=255)                                                                                                                                                                                                                      ggCCGCAGCCCGTATTCAAAgggctgcggcctgttgtcgcaggggttgaaaccgtaacactttgttgctaagg                                                                                                                                                                              >  1:936208‑M2/1‑20 (MQ=255)                                                                                                                                                                                                                         cGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCTCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGTTCTTTTGACCCgg                                                                                      >  2:1009477/1‑158 (MQ=255)                                                                                                                                                                                                                         cGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGTCCCGTCCCGAggg                                                                                                                                        >  2:428394/1‑108 (MQ=255)                                                                                                                                                                                                                          gCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCa       <  1:557455/236‑1 (MQ=255)                                                                                                                                                                                                                           cAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGc                >  1:433090/1‑226 (MQ=255)                                                                                                                                                                                                                              cccGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCggggg                 >  2:657038/1‑222 (MQ=255)                                                                                                                                                                                                                                    ttCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTACGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTAc  <  2:584397/231‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                  TGCCGTACTGCAGTTCGGTGGTGGCTGCCAGGGTTGCGGCCAGGCCGATGTCACCCTGAAGGAAGGCATCGAGCGCACCCTGCTCGAGCGTATTCCGGAGCTGAAGGGCGTGCGCGACGTGACTGACCACAGCCAGAAAGAAAACGCCTACTACTGAGTTGAAGGCGGCTCCCTTAGCAACAAAGTGTTACGGTTTCAACCCCTGCGACAACAGGCCGCAGCCCGTATTCAAAGGGCTGCAGGCCATCCCCGCCATGGTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTAC  >  AE015451/2719302‑2719759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.