| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 3194834 = | 36 (0.580) | 3 (0.050) | 3/330 | NT | 7.9% | coding (36/1332 nt) | PP_2802 | Amino acid permease family protein |
| ? | AE015451 | 3194851 = | 35 (0.590) | coding (19/1332 nt) | PP_2802 | Amino acid permease family protein | |||||
GGCCATCTGTTCCAGATGAGCAAGGACCTGGGCATCCCCCGCTTCGCCGAGGTCAAGGGTGTGCGCGAGGAAGACTTCCCGACCATTGCCGAGAAGTCCAAGCAGAACTTCTCGGACGCCAGCAATGCCAAGGCGATGTCCGTAGAGGCCTACCACGACATCATCACCACCGCTTACCACTTCGTCGCGTAAGAGGGCTCCGTCATGAGTCAGTCAACCTCCGGCGCCTCGTTGAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3195073‑3194834‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggcgcCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGT > AE015451/3194851‑3194895 GGCCATCTGTTCCAGATGAGCAAGGACCTGGGCATCCCCCGCTTCGCCGAGGTCAAGGGTGTGCGCGAGGAAGACTTCCCGACCATTGCCGAGAAGTCCAAGCAGAACTTCTCGGACGCCAGCAATGCCAAGGCGATGTCCGTAGAGGCCTACCACGACATCATCACCACCGCTTACCACTTCGTCGCGTAAGAGGGCTCCGTCATGAGTCAGTCAACCTCCGGCGCCTCGTTGAG < 1:885845/236‑1GGCCATCTGTTCCAGATGAGCAAGGACCTGGGCACCCCCCGCTTCGCCGAGGTCAAGGGTGTGCGCGAGGAAGACTTCCCGACCATTGCCGAGAAGTCCAAGCAGAACTTCTCGGACGCCAGCAATGCCAAGGCGATGTCCGTAGAGGCCTACCACGACATCATCACCACCGCTTACCACTTCGTCGCGTAAGAGGGCTCCGTCATGAGTCAGTCAACCTCCGGCGCCTCGTTGAG < 1:945997/236‑1 CCATCTGTTCCAGATGAGCAAGGACCTGGGCATCCCCCGCTTCGCCGAGGTCAAGGGTGTGCGCGAGGAAGACTTCCCGACCATTGCCGAGAAGTCCAAGCAGAACTTCTCGGACGCCAGCAATGCCAAGGCGATGTCCGTAGAGGCCTACCACGACATCATCACCACCGCTTACCACTTCGTCGCGTAAGAGGGCTCCGTCATGAGTCAGTCAACCTCCGGCGCCTCGTTGAG < 2:885866/234‑1 CCGCTTCGCCGAGGTCAAGGGTGTGCGCGAGGAAGACTTCCCGACCATTGCCGAGAAGTCCAAGCAGAACTTCTCGGACGCCAGCAATGCCAAGGCGATGTCCGTAGAGGCCTACCACGACATCATCACCACCGCTTACCACTTCGTCGCGTAAGAGGGCTCCGTCATGAGTCAGTCAACCTCCGGCGCCTCGTTGA > 2:872994/1‑197 TCTCGGACGCCAGCAATGCCAAGGCGATGTCCGTAGAGGCCTACCACGACATCATCACCACCGCTTACCACTTCGTCGCGTAAGAGGGCTCCGTCATGAGTCAGTCAACCTCCGGCGCCTCGTTG > 2:880073/1‑125 TGCCACGGCGATGTCCGTAGAGGCCTACCACGACATCATCACCACCGCTTACCACTTCGTCGCGTAAGAGGGCTCCGTCATGAGTCAGTCAACCTCCGGCGCCTCGTTGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGT < 2:541965/160‑1 AGGCCTACCACGACATCATCACCACCGCTTACCACTTCGTCGCGTAAGAGGGCTCCGTCATGAGTCAGTCAACCTCCGGCGCCTCGTTGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTAC < 1:1063137/130‑1 AGGCCTACCACGACATCATCACCACCGCTTACCACTTCGTCGCGTAAGAGGGCTCCGTCATGAGTCAGTCAACCTCCGGCGCCTCGTTGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTAC > 2:1063136/1‑130 GGCCATCTGTTCCAGATGAGCAAGGACCTGGGCATCCCCCGCTTCGCCGAGGTCAAGGGTGTGCGCGAGGAAGACTTCCCGACCATTGCCGAGAAGTCCAAGCAGAACTTCTCGGACGCCAGCAATGCCAAGGCGATGTCCGTAGAGGCCTACCACGACATCATCACCACCGCTTACCACTTCGTCGCGTAAGAGGGCTCCGTCATGAGTCAGTCAACCTCCGGCGCCTCGTTGAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3195073‑3194834‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggcgcCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGT > AE015451/3194851‑3194895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |