New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3194834 =	36 (0.580)	3 (0.050)	3/330	NT	7.9%	coding (36/1332 nt)	PP_2802	Amino acid permease family protein
	?	AE015451	3194851 =	35 (0.590)					coding (19/1332 nt)	PP_2802	Amino acid permease family protein

TGCGGGTGTAGGTGTAGGCCGAACCTGCCACCGGGAACACCCTGACCAGTCGGCCATAGCTCAAGGCCGTGAACACAACGCCGGTGGCTGCGACCAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTGCTGGCGTCCGAGAAGTTCTGCTTGGACTTCTCGGCAATGGTCGGGAAGTCTTCCTCGCGCACACCCTTGACCTCGGCGAAGCGG  >  AE015451/3194620‑3195035                                                                                                                                                                                                                       |                                                                                                                                                                                                          tGCGGGTGTAGGTGTAGGCCGAACCTGCCACCGGGAACACCCTGACCAGTCGGCCATAGCTCAAGGCCGTGAACACAACGCCGGTGGCTGCGACCAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAAc                                                                                                                                                                                                  <  1:164394/224‑1 (MQ=255)  gCGGGTGTAGGTGTAGGCCGAACCTGCCACCGGGAACACCCTGACCAGTCGGCCATAGCTCAAGGCCGTGAACACAACGCCGGTGGCTGCGACCAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGGGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCgg                                                                                                                                                                                        >  1:448753/1‑233 (MQ=255)               taggCCGAACCTGCCACCGGGAACACCCTGACCAGTCGGCCATAGCTCAAGGCCGTGAACACAACGCCGGTGGCTGCGACCAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCa                                                                                                                                                                         >  1:664268/1‑235 (MQ=255)                                         ccTGACCAGTCGGCCATAGCTCAAGGCCGTGAACACAACGCCGGTGGCTGCGACCAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTAcgcg                                                                                                                                                     <  1:783552/229‑1 (MQ=255)                                                aGTCGGCCATAGCTCAAGGCCGTGAACACAACGCCGGTGGCTGCGACCAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACGCATGACGGAGCCCTCTTACGcgacg                                                                                                                                                  >  1:60552/1‑225 (MQ=255)                                                 gTCGGCCATAGCTCAAGGCCGTGAACACAACGCCGGTGGCTGCGACCAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGtt                                                                                                                                                                                   <  1:456094/191‑1 (MQ=255)                                                    ggCCATAGCTCAAGGCCGTGAACACAACGCCGGTGGCTGCGACCAGGTAGGCCATGGGCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGGCAGAGGTTGACTGACTCATGACGGAGCCCTCTTACGcgac                                                                                                                                                   >  2:608373/1‑220 (MQ=255)                                                     gCCATAGCTCAAGGCCGTGAACACAACGCCGGTGGCTGCGACCAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCggtg                                                                                                                                   >  1:663317/1‑235 (MQ=255)                                                                  gCCGTGAACACAACGCCGGTGGCTGCGACCAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTg                                                                                                                     <  1:618123/236‑1 (MQ=255)                                                                         acacAACGCCGGTGGCTGCGACCAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTtgactgac                                                                                                                                                                            >  2:800974/1‑174 (MQ=255)                                                                         acacAACGCCGGTGGCTGCGACCAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCGCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGGCGTGGTAGGc                                                                                                               >  1:618366/1‑235 (MQ=255)                                                                                 ccGGTGGCTGAGACCAGGTGGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGcgacg                                                                                                                                                  <  1:214439/192‑1 (MQ=255)                                                                                             gccAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATg                                                                                                                                                                       <  2:27930/158‑1 (MQ=255)                                                                                              ccAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGcgac                                                                                                                                                   >  1:616241/1‑178 (MQ=255)                                                                                                           ggCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAACGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACGGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGGGGTGGTGATGATGTCGTGGt                                                                                                                   >  1:853488/1‑197 (MQ=255)                                                                                                             ccGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTGCTGGCGTCCgag                                                                          >  1:931323/1‑236 (MQ=255)                                                                                                               gtggtgTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTg                                                                                      >  1:918094/1‑222 (MQ=255)                                                                                                                   tgtTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTGCTg                                                                                   >  2:467526/1‑221 (MQ=255)                                                                                                                    gtTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACg                                                                                                        >  1:330014/1‑199 (MQ=255)                                                                                                                       gCCGCTGGCCGGGGTGAGCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTg                                                                                                                     <  2:143977/183‑1 (MQ=255)                                                                                                                          gCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCt                                                                                              <  1:202400/203‑1 (MQ=255)                                                                                                                          gCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCt                                                                                              >  2:202400/1‑203 (MQ=255)                                                                                                                            tGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTg                                                                                                                     <  2:765600/178‑1 (MQ=255)                                                                                                                                       cgcACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTAc                                                                                                                                                        <  2:110262/130‑1 (MQ=255)                                                                                                                                                     gCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCctct                                                                                                           >  2:1030175/1‑163 (MQ=255)                                                                                                                                                     gCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATc                                                                                                  >  1:419441/1‑172 (MQ=255)                                                                                                                                                             cGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTGCTGGCGTCCGAGAAGTTCTGCTTGGACTTCTCGGCAATGGTCGGGAAGTCTTCCTcgc                            <  2:931322/234‑1 (MQ=255)                                                                                                                                                               aTTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGCACATCGCCTTGGCAtt                                                                                       <  2:868727/173‑1 (MQ=255)                                                                                                                                                                 tAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTGCTGGCGTCCGAGAAGTTCTGCTTGGACTTCTCGGCAATGGTCGGGAAGTCTTCCTcgc                            <  1:392229/230‑1 (MQ=255)                                                                                                                                                                          acttcgtcgcgtaagagggctccgtcatgagtcagtcaacctccgGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCGTGGCa                                                                                         <  2:541965‑M1/115‑1 (MQ=255)                                                                                                                                                                           aGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTGCTGGCGTCCGAGAAGTTCTGCTTGGACTTCTCGGCAATGGTCGGGAAGTCTTCCTCGCGCACACCCTTGACCTc            >  1:812613/1‑236 (MQ=255)                                                                                                                                                                             gAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTGCTGGCGTCCGAGAAGTTCTGCTTGGACTTCTCGGCAATGGTCGGGAAGTCTTCCTcgc                            <  2:755643/218‑1 (MQ=255)                                                                                                                                                                                    gtaagagggctccgtcatgagtcagtcaacctccgGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCct                                                                                                             >  2:1063136‑M1/36‑130 (MQ=255)                                                                                                                                                                                    gtaagagggctccgtcatgagtcagtcaacctccgGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCct                                                                                                             <  1:1063137‑M1/95‑1 (MQ=255)                                                                                                                                                                                       ccGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCTGAGGTTGACTGACTCATGACGGAGCACTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTGCTGGCGTCCGAGAAGTTCTGCTTGGACTTCTCGGCAATGGTCGGGAAGTCTTCCTCTCGCACACCCTTGACCTCGGCGAAGCgg  <  2:699470/234‑1 (MQ=255)                                                                                                                                                                                         gAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTa                                                                                                                  >  1:1009027/1‑120 (MQ=255)                                                                                                                                                                                         gAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTGCTGGCGTCCGAGAAGTTCTGCTTGGACTTCTCGGCAATGGTCGGGAAGTCTTCCTCGCGCACACCCTTGACCTCGGCgg       >  1:739013/1‑226 (MQ=255)                                                                                                                                                                                                       aaaaCGGGCCCGGGCTGCGCCTCCACGAGGCGCCGGAGGTTGACGGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTGCTGGCGTCCGAGAAGTTCTGCTTGGACTTCTCGGCAATGGTCGGGAAGTCTTCCTcgc                            <  2:152041/192‑1 (MQ=255)                                                                                                                                                                                                              gCCCAGGCTGCTCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCTTTGCTGGCGTCCgaga                                                                         <  2:551568/140‑1 (MQ=255)                                                                                                                                                                                                                      tGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGGAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTGCTGGCGTCCGAGAAGTTc                                                                    >  2:136790/1‑137 (MQ=255)                                                                                                                                                                                                                       |                                                                                                                                                                                                          TGCGGGTGTAGGTGTAGGCCGAACCTGCCACCGGGAACACCCTGACCAGTCGGCCATAGCTCAAGGCCGTGAACACAACGCCGGTGGCTGCGACCAGGTAGGCCATGGCCGTGGTGTTGCCGCTGGCCTGGGTGATCACGCCGTAGGTGCCGAAGACGATTAGCGGGGCCAGGAAGGCCAGGCCGAACAGCAGCACGGAAAACGGGCCCAGGCTGCGCCTCAACGAGGCGCCGGAGGTTGACTGACTCATGACGGAGCCCTCTTACGCGACGAAGTGGTAAGCGGTGGTGATGATGTCGTGGTAGGCCTCTACGGACATCGCCTTGGCATTGCTGGCGTCCGAGAAGTTCTGCTTGGACTTCTCGGCAATGGTCGGGAAGTCTTCCTCGCGCACACCCTTGACCTCGGCGAAGCGG  >  AE015451/3194620‑3195035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.