New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3511702 =	55 (0.890)	3 (0.050)	3/328	NT	5.5%	coding (370/4158 nt)	PP_3108	Rhs‑related protein
	?	AE015451	3511783 =	50 (0.850)					coding (451/4158 nt)	PP_3108	Rhs‑related protein

GGGTACCCGCCTTGATCAGCTGGGCGATACCGCCTGCGGCACCGGCGATGGCCATCAGCACATCCACGGTGGTGCGCAGCCACTCCGGGACTTCATCGTCCACGGGCAGGTAACGGTAGGTGCCGCCGCCGATGATGACGTTGTCCGAACCACCGGAAATGGTGGCGCCGCAGGTCAGCTTGTCGCCCTTGCGCGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3511903‑3511702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggcACCTACCGTTACCTGCCCGTGGACGATGAAGTCCCGGAGTGGCTGCGCACCACCGTGGATGTGCTGATGGCCATCGCCGGTGCCGCAGGCGGTATCGCCCAGCTGATCAAGGCGGGTACCCAGGCCGGCATGAAAGCCGTCATGCCTTGCGCCCTGAAGTTCACGGCCGGCTTCGTCGCCGGTGAGGTGGCCAGCCGTTATGTGGTCGAACCCGTG  >  AE015451/3511783‑3511998                                                                                                                                                                                                                                                                                                                                                                                                                                    GGGTAACCGCCTTGATCAGCTGGGCGATACCGCCTGCGGCACCGGCGATGGCCATCAGCACATCCACGGTGGTGCGCAGCCACTCCGGGACTTCATCGTCCACGGGCAGGTAACGGTAGGTGCCGCCGCCGATGATGACGTTGTCCGAACCACCGGAAATGGTGGCGCCGCAGGTCAGCTTGTCGCCCTTGCGCGCGGCGG                                                                                                                                                                                                                           <  2:493654/201‑1                                                                   CGGTGGTGCGCAGCCACTCCGGGACTTCATCGTCCACGGGCAGGTAACGGTAGGTGCCGCCGCCGATGATGACGTTGTCCGAACCACCGGAAATGGTGGCGCCGCAGGTCAGCTTGTCGCCCTTGCGCGCGGCGGCACCTACCGTTACCTGCCCGTGGACGATGAAGTCCCGG                                                                                                                                                                                     <  1:729168/173‑1                                                                                               agCGTCCACGGGCAGGTAACGGTAGGTGCCGCCGCCGATGATGACGTTGTCCGAACCACCGGAAATGGTGGCGCCGCAGGTCAGCTTGTCGCCCTTGCGCGCGGCGGCACCTACCGTTACCTGCCCGTGGACGATGAAGTCCCGGAGTGGCTGC                                                                                                                                                                            <  1:740035/152‑1                                                                                                                                                 CCGAACCACCGGAAATGGTGGCGCTGCAGGTCACCTTGACGCCCTTCCGCGCGGCGGCACCTACCGTTACCTGCCCGTGGACGATGAAGTCCCGGAGTGGCTGCGCACCA                                                                                                                                                                      <  2:681249/110‑1                                                                                                                                                                                                     GGCGGCACCTACCGTTACCTGCCCGTGGACGATGAAGTCCCGGAGTGGCTGCGCACCACCGTGGATGTGCTGATGGCCATCGCCGGTGCCGCAGGCGGTATCGCCCAGCTGATCAAGGCGG                                                                                                       >  1:149462/1‑121                                                                                                                                                                                                      GCGGCACCTACCGTTACCTGCCCGTGGACGATGAAGTCCCGGAGTGGCTGCGCACCACCGTGGATGTGCTGATGGCCATCGCCGGTGCCGCAGGCGGTATCGCCCAGCTGATCAAGGCGGGTACCCAGGCCGGCATGAAAGCCGTCATGCCTTGCGCCCTGAAGTTCACGGCCGGCTTCGTCGCCGGTGAGGTGGCCAGCCGTTATGTGGTCGAACCCGTc  >  1:836645/1‑220                                                                                                                                                                                                                                                                                                                                                                                                                                    GGGTACCCGCCTTGATCAGCTGGGCGATACCGCCTGCGGCACCGGCGATGGCCATCAGCACATCCACGGTGGTGCGCAGCCACTCCGGGACTTCATCGTCCACGGGCAGGTAACGGTAGGTGCCGCCGCCGATGATGACGTTGTCCGAACCACCGGAAATGGTGGCGCCGCAGGTCAGCTTGTCGCCCTTGCGCGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3511903‑3511702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggcACCTACCGTTACCTGCCCGTGGACGATGAAGTCCCGGAGTGGCTGCGCACCACCGTGGATGTGCTGATGGCCATCGCCGGTGCCGCAGGCGGTATCGCCCAGCTGATCAAGGCGGGTACCCAGGCCGGCATGAAAGCCGTCATGCCTTGCGCCCTGAAGTTCACGGCCGGCTTCGTCGCCGGTGAGGTGGCCAGCCGTTATGTGGTCGAACCCGTG  >  AE015451/3511783‑3511998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.