| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 3710882 | 37 (0.600) | 5 (0.080) | 5/328 | NT | 12.8% | coding (64/534 nt) | paaD | putative subunit of phenylacetate degradation enzyme |
| ? | AE015451 | = 3710901 | 33 (0.560) | coding (45/534 nt) | paaD | putative subunit of phenylacetate degradation enzyme | |||||
GTGCTCCAGGCCGGGGTCAGCCGGCGCTCCAGCTCTGGCGCGCTGAAGCCGGCCTGTTCCAGCGCCTGGCGGATATCCCCTTCGATGACTTCGGTGGCCGGGCAGCCAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/3710641‑3710882‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacgggcACAGCAAGGCGACGACGTGGCCCGTGCCTGGGCGGTATTGGGCCAGGTCATGGACCCTGAAGTGCCGGTGGTCAGCGTGGTCGACCTGGGGATCGTGCGCGATGTCGATTGGCGCGCCGGCCACCTGCACCTGGTGGTCACCCCGACCTACTCTGGCTGCCCGGCCACCGAAGTCATCGAAGGGGATATCCGCCAGGCGCTGGAACAGGCCGGCTTCAGCGCGCCAGAGCTGGA < AE015451/3710901‑3710668 GTGCTCCAGGCCGGGGTCAGCCGGCGCTCCAGCTCTGGCGCGCTGAAGCCGGCCTGTTCCAGCGCCTGGCGGATATCCCCTTCGATGACTTCGGTGGCCGGGCAGCCAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGG > 1:417668/1‑235GTGCTCCAGGCCGGGGTCAGCCGGCGCTCCAGCTCTGGCGCGCTGAAGCCGGCCTGTTCCAGCGCCTGGCGGATATCCCCTTCGATGACTTCGGTGGCCGGGCAGCCAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGG > 1:670510/1‑235 CACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCACAGCAAGGCGACGACGTGGCCCGTGCCTGGGCGGTATTGGGCCAGGTCATGGACCCTGAAGTGCCGGTGGTCCGCGGGGTCGACCTGGGGATCGGGCGCGATGTC > 1:119534/1‑166 CACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCAC > 2:897304/1‑56 ACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCACAGCAAGGCGACGACGTGGCCCGTGCCTGGGCGGTATTGGGCCAGGTC > 2:878596/1‑108 ACCTGGCCCAATACCGCCCAGGCACGGGCACAGCAAGGCGACGACGTGGCCCGTGCCTGGGCGG > 1:288469/1‑64 CCAATACCGCCCAGGCACGGGCACAGCAAGGCGACGACGTGGCCCGTGCCTGGGCGGTATTGGGCCAGGTCATGGACCCTGAAGTGCCGGTGGTCAGCGTGGTCGACCTGGGGATCGT > 2:628385/1‑118 CCGCCCAGGCACGGGCACAGCAAGGCGACGACGTGGCCCGTGCCTGGGCGGTATTGGGCCAGGTCATGGACCCTGAAGTGCCGGTGGTCAGCGTGGTCGACCTGGGGATCGTGCGCGATGTCGATTGGCGCGCCGGCCACCTGCACCTGGTGGTCACCCCGACCTACTCTGGCTGCCCGGCCACCGAAGTCATC > 2:882659/1‑194 ACGGGCACAGCAAGGCGACGACGTGGCCCGTGCATGGGGGGTATTAGGCCAGGTCATGGTCCCTGAAGTGCCTGTGGTCAG > 2:922636/1‑81 GCACAGCAAGGCGACGACGTGGCCCGTGCCTGGGCGGTATTGGGCCAGGTCATGGACCCTGAAGTGCCGGTGGTCAGCGTGGTCGACCTGGGGATCGTGCGCGATGTCGATTGGCGCGCCGGCCACCTGCACCTGGTGGTCACCCCGACCTACTCTGGCTGCCCGGCCACCGAAGTCATCGAAGGGGATATCCGCCAGGCGCTGGAACAGGCCGGCTTCAGCGCGCCAGAGCTGGA < 1:489941/236‑1 GTGCTCCAGGCCGGGGTCAGCCGGCGCTCCAGCTCTGGCGCGCTGAAGCCGGCCTGTTCCAGCGCCTGGCGGATATCCCCTTCGATGACTTCGGTGGCCGGGCAGCCAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/3710641‑3710882‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacgggcACAGCAAGGCGACGACGTGGCCCGTGCCTGGGCGGTATTGGGCCAGGTCATGGACCCTGAAGTGCCGGTGGTCAGCGTGGTCGACCTGGGGATCGTGCGCGATGTCGATTGGCGCGCCGGCCACCTGCACCTGGTGGTCACCCCGACCTACTCTGGCTGCCCGGCCACCGAAGTCATCGAAGGGGATATCCGCCAGGCGCTGGAACAGGCCGGCTTCAGCGCGCCAGAGCTGGA < AE015451/3710901‑3710668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |