New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3710882	37 (0.600)	5 (0.080)	5/328	NT	12.8%	coding (64/534 nt)	paaD	putative subunit of phenylacetate degradation enzyme
	?	AE015451	= 3710901	33 (0.560)					coding (45/534 nt)	paaD	putative subunit of phenylacetate degradation enzyme

TCCAGCTCTGGCGCGCTGAAGCCGGCCTGTTCCAGCGCCTGGCGGATATCCCCTTCGATGACTTCGGTGGCCGGGCAGCCAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCAGGTAGAAGTGGCTGGCGGCCTTGGGCAGCGGCAGTTCGACCGAAGCAAACGTCGCGGCGACCTGCTTCAGCCAGGTGGCGCCGACG  >  AE015451/3710668‑3711112                                                                                                                                                                                                                                          |                                                                                                                                                                                                                    tCCAGCTCTGGCGCGCTGAAGCCGGCCTGTTCCAGCGCCTGGCGGATATCCCCTTCGATGACTTCGGTGGCCGGGCAGCCAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTgc                                                                                                                                                                                                                   <  1:489941‑M2/236‑3 (MQ=255)                               tCCAGCGCCTGGCGGATATCCCCTTCGATGACTTCGGTGGCCGGGCAGCCAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGtt                                                                                                                                                                                      <  1:480917/235‑1 (MQ=255)                                                atCCCCTTCGATGACTTCGGTGGCCGGGCAGCCAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCgg                                                                                                                                                                      <  2:1087251/234‑1 (MQ=255)                                                         gATGACTTCGGTGGCCGGGCAGCCAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTgcccgtgcctgggcgg                                                                                                                                                                                                     >  2:882659‑M2/1‑178 (MQ=255)                                                          aTGACTTCGGTGGCCGGGCAGCCAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCtt                                                                                                                                                           <  1:723589/235‑1 (MQ=255)                                                                      gCCGGGCAGCCAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGa                                                                                                                                                    >  1:350673/1‑230 (MQ=255)                                                                                cAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCcag                                                                                                                                    <  1:637235/236‑1 (MQ=255)                                                                                cAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCca                                                                                                                                     <  1:367716/235‑1 (MQ=255)                                                                                     tAGGTCGGGGTGACCGCCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTg                                                                                                                                                                            <  1:234515/191‑1 (MQ=255)                                                                                            gggTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGcccc                                                                                                                         >  1:150897/1‑234 (MQ=255)                                                                                              gTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGAt                                                                                                                      <  1:445777/236‑1 (MQ=255)                                                                                                          tgcaggtgGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAgg                                                                                                                                                                               >  1:1080512/1‑167 (MQ=255)                                                                                                            caggtgGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCCCCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTc                                                                                                                                          <  1:173451/202‑1 (MQ=255)                                                                                                              ggtgGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTg                                                                                                                                                                            >  2:931956/1‑166 (MQ=255)                                                                                                              ggtgGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTg                                                                                                                                                                            <  1:931957/166‑1 (MQ=255)                                                                                                               ttgGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACGTCAGGGTCCATGCCCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCcagca                                                                                                                                  <  1:992950/206‑1 (MQ=255)                                                                                                                               tCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTg                                                                                                                                                                            <  2:900586/149‑1 (MQ=255)                                                                                                                                 gACATCGCGCCCGATCCCCAGGTCGACCCCGCGGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTgcccgtgcctgggcggtattgggccaggtcatggaccctgaagtgccggtggtcagcgtg                                                                                                                                                         >  1:119534‑M2/1‑106 (MQ=255)                                                                                                                                  ccATCGCGCACGATCCCCAGGTCGACAACGCTGACCCCCGGCACTTCAGGGTCCATGCCCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTgcg                                                                                                                                                                                                            <  2:109272/113‑1 (MQ=255)                                                                                                                                           aCGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTgcccgtgcctgggcggtattgg                                                                                                                                                                                               >  2:628385‑M2/1‑96 (MQ=255)                                                                                                                                            cGATCCCCAGGTCGACCACGCTGACCCCCGGCCCTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCgg                                                                                                                                                                      <  2:330070/142‑1 (MQ=255)                                                                                                                                                       tCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGc                                                                                                                    <  1:1094892/181‑1 (MQ=255)                                                                                                                                                            cACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCAGGTAGAAGTGGCTGGCGGCCTTGGGc                                                              >  2:994270/1‑230 (MQ=255)                                                                                                                                                            cACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCAGGAAGAAGTGGCTggcg                                                                       >  1:251452/1‑221 (MQ=255)                                                                                                                                                               gCTGACCCCCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGc                                                                                                                    <  1:145101/173‑1 (MQ=255)                                                                                                                                                                cTGACCACAGGCACTTCAGGGACCATGACCTGGCCTAATACCCCCCATGCACGGGCCACGTCGTCGCCTTGCTGTgcccgt                                                                                                                                                                                                               >  2:922636‑M2/1‑75 (MQ=255)                                                                                                                                                                                     tCCATGCCCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGcc                                                                                             <  1:281085/174‑1 (MQ=255)                                                                                                                                                                                       cctGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGt                                                                                                                                                                                       <  2:145948/80‑1 (MQ=255)                                                                                                                                                                                          gACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTgcccgtgcctgggcggtattgggccaggtcatggaccctgaagtgccggtggtcagcgt                                                                                                                                                          >  2:878596‑M2/1‑49 (MQ=255)                                                                                                                                                                                           aCCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCAGGTAGCAGTGGCTGGCGGCCTTGGGCAGCGGCAGTTCGACCGAAGCAAACGt                                    >  1:41585/1‑225 (MQ=255)                                                                                                                                                                                                  ccAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAgg                                                                                                        >  2:281084/1‑150 (MQ=255)                                                                                                                                                                                                        ccGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTgcccgtgcctgggcggtattgggccaggt                                                                                                                                                                                        >  1:288469‑M2/1‑35 (MQ=255)                                                                                                                                                                                                         cGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCAGGTAGAAGTGGCTGGCGGCCTTGGGCAGCGGCAGCTCGACCGAAGCAAACGGCGCGGCGACCTGCTTCAGCCAGGTg           >  1:259692/1‑236 (MQ=255)                                                                                                                                                                                                             cAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCGGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCAGGTAGAAGTGGCTGGCGGCCTTGGGCAGCGGCAGTTCGACCGAAGCAAACGTCGCGGCGACCTGCTTCAGCCAGGTGgcgc       >  1:574047/1‑236 (MQ=255)                                                                                                                                                                                                             cAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCAGGt                                                                                     >  2:876266/1‑158 (MQ=255)                                                                                                                                                                                                             cAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCAGGTAGAAGTGGCTGGCGGCCTTGGGCAGCGGCAGTTCGACCGAAGCAAACGTcgc                                 >  2:1015144/1‑210 (MQ=255)                                                                                                                                                                                                             cAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCAGGTAGAAGTGGCTGGCGGCCTTGGGCAGCGGCAGTTCGACCGAAGCAAACGTCGCGGCGACCTGCTTCa                   >  1:994726/1‑224 (MQ=255)                                                                                                                                                                                                             cAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCAGTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCGGGTAGAAGTGGCTGGCGGCCTTGGGCa                                                             >  1:1115042/1‑182 (MQ=255)                                                                                                                                                                                                                  ttgggCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCAGGTAGAAGTGGCTGGCGGCCTTGGGCAGCGGCAGTTCGACCGAAGCAAACGTCGCGGCGACCTGCTTCAGCCAGGTGGCGCCGACg  >  1:1053926/3‑236 (MQ=255)                                                                                                                                                                                                                        cACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCGTTGCGGCCATCCAGGTAGAAGTGGCTGGCGGCCTTgg                                                                >  1:755512/1‑168 (MQ=255)                                                                                                                                                                                                                                     tGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCAGGTAGAAGTGGCTGGCGGCCTTGGGCAGCGGTAGTTCGACCGAAGCAAACGTCGCGGCGAc                           >  2:434651/1‑192 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                    TCCAGCTCTGGCGCGCTGAAGCCGGCCTGTTCCAGCGCCTGGCGGATATCCCCTTCGATGACTTCGGTGGCCGGGCAGCCAGAGTAGGTCGGGGTGACCACCAGGTGCAGGTGGCCGGCGCGCCAATCGACATCGCGCACGATCCCCAGGTCGACCACGCTGACCACCGGCACTTCAGGGTCCATGACCTGGCCCAATACCGCCCAGGCACGGGCCACGTCGTCGCCTTGCTGTGCCCGTGCGCCGCGGTCGCCGGCAATCAGTTCACCAGGTTGCATCGGGGTAGGCCCTTGGCAGGAACTGCATTTCGGCCAGCAGCAGGCCCAGATGCTCGGTGTGCAGGCCTTTGCGGCCATCCAGGTAGAAGTGGCTGGCGGCCTTGGGCAGCGGCAGTTCGACCGAAGCAAACGTCGCGGCGACCTGCTTCAGCCAGGTGGCGCCGACG  >  AE015451/3710668‑3711112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.