| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 3875618 | 46 (0.740) | 5 (0.090) | 4/326 | NT | 10.5% | coding (110/1212 nt) | xcpS | Type II secretion pathway protein XcpS |
| ? | AE015451 | = 3875776 | 42 (0.720) | coding (268/1212 nt) | xcpS | Type II secretion pathway protein XcpS | |||||
CGTGCCGCAAGACCCGTGGGGCCGCCCTTACATCTACCGGCAACCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/3875377‑3875618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccaggcTTTCCAGTGCGTCGATCAGCGGCAGGCCGGCATTGAGCAAGGTTGACAGTTCCTGGCTGAACAGCACCAGGTCGAATGCCGCTTCACGGCGCCAGGCCATGCCGCGCAGCGCGCCGCCGCTGCTGCGCAGGCTGAGCACACGCAGGCCCTGGTCTTCGGCCTGGCGGCGGGCCTGGTCGGCGTCCTCGGCGTCGATCTGCAACTGCACCACACCCTGCCTACCCAGGGCCT < AE015451/3875776‑3875546 aGTGCCGCAAGACCCGTGGGGCCGCCCTTACGTCTACCGGCAACCCGGCGAGAATGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGCGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCg > 2:598392/2‑234CGTGCCGCCAGACCCGTGGGGCCGCCCTTACATCTACCGGCAACCCGGCGAGAACGGCGGAGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCC < 1:461565/235‑1 CGCAAGACCCGTGGGGCCGCCCTTACATCTACCGGCAACCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGG < 1:1060471/236‑1 GCAAGACCCGTGGGGCCGCCCTTACATCTACCGGCAACCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGC < 1:405328/236‑1 AAGACCCGCGTGGCCGCCCTTACATCTACCGGCAACCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGCTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGG < 2:638415/233‑1 tgcgcCCTGCTGGCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCTTTCCAGTGCGTCGATCAGCGGCAGGCCGGCATTGAGCAAGGTTGACAGTTCC < 2:852565/226‑1 CGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGGGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGC > 2:789373/1‑160 GAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCTTTCCAGTGCGTCGATCAGCGGCAGGCCGGCATTGAGCAAGGTTGACAGTTCCTGGCTGAACAGC < 2:628698/195‑1 GGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCTTTCCAGTGCGTCGATCAGCGGC > 1:411830/1‑88 GGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCTTTCCAGTGCGTCGATCAGCGGC < 2:411829/88‑1 ACCAGGCCCGCCGCCAGGCTTTCCAGTGCGTCGATCAGCGGCAGGCCGGCATTGAGCAAGGTTGACAGTTCCTGGCTGAACAGC < 2:929170/84‑1 CGCCAGGCTTTCCAGTGCGTCGATCAGCGGCAGGCCGGCATTGAGCAAGGTTGACAGTTCCTGGCTGAACAGCACCAGGTCGAATGCCGCTTCACGGCGCCAGGCCATGCCGCGCAGCGCGCCGCCGCTGCTGCGCAGGCTGAGCACACGCAGGCCCTGGTCTTCGGCCTGGCGGCGGGCCTGGTCGGCGTCCTCGGCGTCGATCTGCAACTGCACCACACCCTGCCTACCCAGGG < 1:971209/236‑1 CAGGCTTTCCAGTGCGTCGATCAGCGGCAGGCCGGCATTGAGCAAGGTTGACAGTTCCTGGCTGAACAGCACCAGGTCGAATGCCGCTTCACGGCGCCAGGCCATGCCGCGCAGCGCGCCGCCGCTGCTGCGCAGGCTGAGCACACGCAGGCCCTGGTCTTCGGCCTGGCGGCGGGCCTGGTCGGCGTCCTCGGCGTCGATCTGCAACTGCACCACACCCTGCCTACCCAGGGCCT < 1:579397/236‑1 CGTGCCGCAAGACCCGTGGGGCCGCCCTTACATCTACCGGCAACCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/3875377‑3875618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccaggcTTTCCAGTGCGTCGATCAGCGGCAGGCCGGCATTGAGCAAGGTTGACAGTTCCTGGCTGAACAGCACCAGGTCGAATGCCGCTTCACGGCGCCAGGCCATGCCGCGCAGCGCGCCGCCGCTGCTGCGCAGGCTGAGCACACGCAGGCCCTGGTCTTCGGCCTGGCGGCGGGCCTGGTCGGCGTCCTCGGCGTCGATCTGCAACTGCACCACACCCTGCCTACCCAGGGCCT < AE015451/3875776‑3875546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |