New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3875618	46 (0.740)	5 (0.090)	4/326	NT	10.5%	coding (110/1212 nt)	xcpS	Type II secretion pathway protein XcpS
	?	AE015451	= 3875776	42 (0.720)					coding (268/1212 nt)	xcpS	Type II secretion pathway protein XcpS

AGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTGGCGCTGGTGCAGTCCAGCGAACGCACCGGTGCCCTGGGCGACGCCCTCACCCGCTACATCAGCTATCGCCAGCGCCTGGACCTGGTCCGGCAGAAGCTGGTG  >  AE015451/3875546‑3876009                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                          aGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAgcctg                                                                                                                                                                                                                                      <  1:579397‑M2/236‑6 (MQ=255)    cccTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAgcctggcg                                                                                                                                                                                                                                   <  1:971209‑M2/236‑9 (MQ=255)         ggTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGaa                                                                                                                                                                                                                              >  1:700779/1‑236 (MQ=255)                       ggtgCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGgag                                                                                                                                                                                                                                >  1:16809/1‑220 (MQ=255)                               tGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGgaga                                                                                                                                                                                                                               >  2:733930/1‑213 (MQ=255)                                                             cccGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAg                                                                                                                                                                                                             >  2:963241/1‑201 (MQ=255)                                                             cccGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCt                                                                                                                                                                           >  1:922195/1‑235 (MQ=255)                                                                gccgccAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGc                                                                                                                                                                                                                  >  2:696005/1‑193 (MQ=255)                                                                    ccAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCGGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTg                                                                                                                                                                                   <  2:680099/220‑1 (MQ=255)                                                                      atgCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCg                                                                                                                                                                                                                 <  1:1070137/186‑1 (MQ=255)                                                                          cGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGt                                                                                                                                                                                                   >  1:774806/1‑198 (MQ=255)                                                                                  aGGGCCTGCGTGGGCTCAGCCGGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGt                                                                                                                                                       <  1:1128206/234‑1 (MQ=255)                                                                                      ccTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAg                                                                                                                                                  >  1:946566/1‑235 (MQ=255)                                                                                           gtgtGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGgcg                                                                                                                                               >  2:774335/1‑233 (MQ=255)                                                                                                       tGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCGCAGGCGCTGGGCCAGCAAcc                                                                                                                                 >  1:1090158/1‑235 (MQ=255)                                                                                                        gcgcAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGCACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGa                                                                                                                                                                                                                >  2:158640/1‑155 (MQ=255)                                                                                                            agcagcGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCACCTGTACGAGGGCCGCTAGCTGTCCCAGGCGCTGGGCCAGCACCCGCggg                                                                                                                            >  1:700925/1‑235 (MQ=255)                                                                                                             gcagcGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCcg                                                                                                                                                               >  1:102053/1‑199 (MQ=255)                                                                                                                      gcgcgcTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCccg                                                                                                                    <  2:700778/233‑1 (MQ=255)                                                                                                                      gcgcgcTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCccg                                                                                                                    >  2:1065167/1‑233 (MQ=255)                                                                                                                        gcgcTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGc                                                                                                                                                                                                                  <  1:353138/137‑1 (MQ=255)                                                                                                                             gcgcGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTc                                                                                                                                                      <  1:609069/192‑1 (MQ=255)                                                                                                                                  gCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTgg                                                                                                       <  1:789374/234‑1 (MQ=255)                                                                                                                                            gcgcCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTGGCGCTg                                                                                                  <  1:708936/229‑1 (MQ=255)                                                                                                                                               ccGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTc                                                                                                                       <  2:628096/205‑1 (MQ=255)                                                                                                                                                cGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAgcgc                                                                                                                                                                                                          <  1:318210/121‑1 (MQ=255)                                                                                                                                                cGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCt                                                                                                                                             >  1:464818/1‑182 (MQ=255)                                                                                                                                                       cGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTGGCGCTGGTGCAGTCCAGCGAAc                                                                                  <  1:859524/234‑1 (MQ=255)                                                                                                                                                        ggCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTc                                                                                                                       <  2:1067789/196‑1 (MQ=255)                                                                                                                                                             tCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTGGCGCTGGTGCAGTCCAGCGAACGCACCggg                                                                          >  1:322922/1‑235 (MQ=255)                                                                                                                                                                  gtGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGACCGACGCACTGGAAAGCCTGGCGGAGAAAAGCTCGGcg                                                                                                                                                                                                                    <  2:268248/92‑2 (MQ=255)                                                                                                                                                                       gCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAgcctggcggcgggcctggtcggcgtcctcggcgtcgatctgcaactgcaccacaccctgcctacccagggccttgaggctgtagcgcatggccgctctccttactgccaactagtaacttcggcattttc                                                                                                         <  2:628698‑M2/195‑131 (MQ=255)                                                                                                                                                                       gCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAgcctggcggcgggcctggt                                                                                                                                                                                                                        <  2:929170‑M2/84‑20 (MQ=255)                                                                                                                                                                       gCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGtg                                                                                                               >  2:1085910/1‑188 (MQ=255)                                                                                                                                                                         tGTTCAGCCCGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGCCGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCCGCGa                                                                                                                                                                                                                >  2:293995/1‑90 (MQ=255)                                                                                                                                                                              aGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTgg                                                                                                                                           >  2:1015344/1‑154 (MQ=255)                                                                                                                                                                              aGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGGGCGTCAGCTGTACGAGGGCCGCTCGCTGGCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGGTgga                                                                                                            >  1:240855/1‑183 (MQ=255)                                                                                                                                                                                   ggAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAgcctggcggcgggcctggtcggcgtcctcggcgtcgatctgcaactgcaccacaccctgcctacccagggccttgaggctgtagcgcatggccgctctccttactgccaactagtaacttcggcattttcgccatcgccacccggctggccgtccttgcccatcgccagcagggcgca                                                         <  2:852565‑M2/231‑179 (MQ=255)                                                                                                                                                                                      aCTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGt                                                                                                                >  2:730533/1‑173 (MQ=255)                                                                                                                                                                                          gcAACCTTGCTCAAGGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTGGCGCTGGTGCAGTCCAGCGAACGCACCGGTGCCCTGGGCg                                                                <  1:792762/216‑1 (MQ=255)                                                                                                                                                                                             aCCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTGGCGCTGGTGCAGTCCAGCGAACGCACCGGTGCCCTGGGCGACGCCCTCACCCGCTACATCAg                                          >  1:966681/1‑236 (MQ=255)                                                                                                                                                                                                ttGCGCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTgg                                                                                                       <  1:443056/172‑1 (MQ=255)                                                                                                                                                                                                     cAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTGGCGCTGGTGCAGTCCAGCGAACGCACCGGTGCCCTGGGCGACGCCCTCACCCGCTACAt                                             >  2:1047893/1‑225 (MQ=255)                                                                                                                                                                                                       aTGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTc                                                                                                                       <  2:1104236/149‑1 (MQ=255)                                                                                                                                                                                                           cGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTGGCGCTGGTGCAGTCCAGCGAACGCACCGGTGCCCTGGGCGACGCCCTCACCCGCTACATCAGCTATCGCCAgcgc                             >  1:1083397/1‑235 (MQ=255)                                                                                                                                                                                                           cGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGGTGTATGTGGCGCTGGTGCAGTCCAGCGAACGCACCGGGGCCCTGGGCGACGCCCTCACCCGCTACATAAGCTATc                                     >  1:199925/1‑227 (MQ=255)                                                                                                                                                                                                            ggCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTGGCGCTGGTGCAGTCCAGCGAACGCACCGGTGCCCTGGGCGACGCCCTCACCCg                                                   >  1:1127458/1‑212 (MQ=255)                                                                                                                                                                                                                 gCCGCTGATCGACGCACTGGAAAgcctggcggcgggcctggtcggcgtcctcggcgtcgatctgcaactgcaccacaccctgcctacc                                                                                                                                                                          >  1:411830‑M2/1‑23 (MQ=255)                                                                                                                                                                                                                 gCCGCTGATCGACGCACTGGAAAgcctggcggcgggcctggtcggcgtcctcggcgtcgatctgcaactgcaccacaccctgcctacc                                                                                                                                                                          <  2:411829‑M2/88‑66 (MQ=255)                                                                                                                                                                                                                 gCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTGGCGCTGGTGCAGTCCAGCGAACGCACCGGTGCCCTGGGCGACGCCCTCACCCGCTACATCAGCTATCGCCAg                                <  1:709682/226‑1 (MQ=255)                                                                                                                                                                                                                  ccGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTgg                                                                                                       <  2:1133328/154‑1 (MQ=255)                                                                                                                                                                                                                            aCGCACTGGAAAGGCGGGCGGAGAAAAGCCCGGCAGCGACAGCGGGCAAGGTGCTCGCCGAGCTGGTGCGTc                                                                                                                                                                               <  2:67092/72‑1 (MQ=255)                                                                                                                                                                                                                                     aaaGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTGGCGCTGGTGCAGTCCAGCGAACGCACCGGTGCCCTGGGCGACGCCCTCACCCGCTACATCAGCTATCGCCAGCGCCTGGACCTGGTCCGGCAGAAGCtggtg  >  1:1083332/1‑236 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                          AGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGGCCGCTCGCTGTCCCAGGCGCTGGGCCAGCAACCGCGGGTATTCCCGCCGTTGTATGTGGCGCTGGTGCAGTCCAGCGAACGCACCGGTGCCCTGGGCGACGCCCTCACCCGCTACATCAGCTATCGCCAGCGCCTGGACCTGGTCCGGCAGAAGCTGGTG  >  AE015451/3875546‑3876009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.