New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3875618	46 (0.740)	5 (0.090)	4/326	NT	10.5%	coding (110/1212 nt)	xcpS	Type II secretion pathway protein XcpS
	?	AE015451	= 3875776	42 (0.720)					coding (268/1212 nt)	xcpS	Type II secretion pathway protein XcpS

GCAAGACCCGTGGGGCCGCCCTTACATCTACCGGCAACCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGG  >  AE015451/3875383‑3875849                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                        gCAAGACCCGTGGGGCCGCCCTTACATCTACCGGCAACCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGC                                                                                                                                                                                                                                         <  1:405328‑M1/236‑1 (MQ=255)             gggCCGCCCTTACATCTACCGGCAACCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAgg                                                                                                                                                                                                                              <  1:1090645/235‑1 (MQ=255)               gccgccCTTACATCTACCGGCAACCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAggg                                                                                                                                                                                                                             <  2:716273/234‑1 (MQ=255)                  gccCGTACATCTACCGGCAACCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCt                                                                                                                                                                                                                          <  2:1051179/234‑1 (MQ=255)                                 ggCAACCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTgc                                                                                                                                                                                                         >  1:938667/1‑236 (MQ=255)                                    aaCCCGGCGAGAACGGCGGTGAGTACGCCCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCt                                                                                                                                                                                                                          <  1:111033/216‑1 (MQ=255)                                     aCCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGTCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTACAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCgca                                                                                                                                                                                                      >  1:628097/1‑235 (MQ=255)                                                           tgcgccctgctgGCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCtttccagtgcgtcgatcagcggcaggccggcattgagcaaggttgacagttcc                                                                                                                                                                                    <  2:852565‑M1/226‑54 (MQ=255)                                                                  tgctgTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACGAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTgcgcaggctga                                                                                                                                                                           <  1:58986/233‑8 (MQ=255)                                                                      gTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGACGACCa                                                                                                                                                                                                                                >  2:74909/1‑176 (MQ=255)                                                                        cGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCgcagca                                                                                                                                                                                                   <  2:938666/203‑1 (MQ=255)                                                                                 aGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTg                                                                                                                                                                                                          >  1:1133329/1‑187 (MQ=255)                                                                                                       tggcgaAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCa                                                                                                                                    <  1:441598/235‑1 (MQ=255)                                                                                                         gcgaAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGc                                                                                                                                                        <  2:1061406/213‑1 (MQ=255)                                                                                                           gaAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCtttccagtgcgtcgatcagcggcaggccggcattgagcaaggttgacagttcctggctgaacagc                                                                                                                                                                        <  2:628698‑M1/195‑66 (MQ=255)                                                                                                           gaAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGCTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCGGCCATGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGcc                                                                                                                                 <  2:593726/234‑1 (MQ=255)                                                                                                                  ccGCAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGA‑CAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGcc                                                                                                                                 <  1:218353/226‑1 (MQ=255)                                                                                                                  ccGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGc                                                                                                                                  <  2:648664/226‑1 (MQ=255)                                                                                                                                 ggCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCa                                                                                                                      <  1:342176/223‑1 (MQ=255)                                                                                                                                    aGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGTCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCg                                                                                                      <  1:206339/236‑1 (MQ=255)                                                                                                                                                ggCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGACGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCgg                                                                                                                                                                                >  2:155134/1‑150 (MQ=255)                                                                                                                                                   cATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCCGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGc                                                                                                                                                        <  1:160401/171‑1 (MQ=255)                                                                                                                                                     tGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGt                                                                                                                                                                >  2:382493/1‑161 (MQ=255)                                                                                                                                                                 tCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGaa                                                                                                                                                             <  2:426973/152‑1 (MQ=255)                                                                                                                                                                    aGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAg                                                                                                                                                                                                                               <  2:294038/83‑1 (MQ=255)                                                                                                                                                                    aGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAgcctg                                                                      <  1:579397‑M2/236‑6 (MQ=255)                                                                                                                                                                     ggCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTg                                                                                           >  1:168909/1‑214 (MQ=255)                                                                                                                                                                       cccTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGCGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCcgcg                                                                                                                                                                                                >  2:367754/1‑111 (MQ=255)                                                                                                                                                                       cccTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAgcctggcg                                                                   <  1:971209‑M2/236‑9 (MQ=255)                                                                                                                                                                       cccTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCGGGCGCCGt                                                                                                                                                                >  2:278393/1‑143 (MQ=255)                                                                                                                                                                            ggTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCtttccagtgcgtcgatcagcggc                                                                                                                                                                                                                  >  1:411830‑M1/1‑65 (MQ=255)                                                                                                                                                                            ggTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCtttccagtgcgtcgatcagcggc                                                                                                                                                                                                                  <  2:411829‑M1/88‑24 (MQ=255)                                                                                                                                                                            ggTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGaa                                                              >  1:700779/1‑236 (MQ=255)                                                                                                                                                                             gTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCg                                                                                       <  1:899528/210‑1 (MQ=255)                                                                                                                                                                                    ggggGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAgcggcggcg                                                                                                                                                                                          >  2:115082/1‑104 (MQ=255)                                                                                                                                                                                    gggTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGAGGGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCgg                                                                                                                                                                                >  2:183686/1‑114 (MQ=255)                                                                                                                                                                                         tggtgCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCTGCCTGCgcag                                                                                                                                                                                                     >  2:111404/1‑88 (MQ=255)                                                                                                                                                                                         tggtgCAGTTGCAGATCGACG‑CGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCAtgc                                                                                                                                                    >  2:278301/1‑134 (MQ=255)                                                                                                                                                                                          ggtgCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTg                                                                                                                                           >  2:899527/1‑145 (MQ=255)                                                                                                                                                                                          ggtgCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGgag                                                                >  1:16809/1‑220 (MQ=255)                                                                                                                                                                                                  tGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTTCTGTTCAGCCAGGaa                                                                                                                            >  2:836464/1‑152 (MQ=255)                                                                                                                                                                                                  tGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGgaga                                                               >  2:733930/1‑213 (MQ=255)                                                                                                                                                                                                    cAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTg                                                                                                                                                                       >  2:198644/1‑107 (MQ=255)                                                                                                                                                                                                    cAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTg                                                                                                                                                                       <  1:198644/107‑1 (MQ=255)                                                                                                                                                                                                              ccGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTg                                                                                                                                                                                                                         >  2:43851/1‑47 (MQ=255)                                                                                                                                                                                                              ccGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGc                                                                                                                                          >  2:157501/1‑126 (MQ=255)                                                                                                                                                                                                              ccGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGt                                                                                                                        <  1:198334/144‑1 (MQ=255)                                                                                                                                                                                                                          aCCAGGCCCGCCGCCAGGCtttccagtgcgtcgatcagcggcaggccggcattgagcaaggttgacagttcctggctgaacagc                                                                                                                                                                        <  2:929170‑M1/84‑66 (MQ=255)                                                                                                                                                                                                                          aCCAGACCCGCCGCCAGGCCGAAGAGCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCt                                                                                                                                         <  2:291453/115‑1 (MQ=255)                                                                                                                                                                                                                               gCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCtt                                                                                                                 <  2:352266/134‑1 (MQ=255)                                                                                                                                                                                                                                cccGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAg                                             >  2:963241/1‑201 (MQ=255)                                                                                                                                                                                                                                cccGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCt           >  1:922195/1‑235 (MQ=255)                                                                                                                                                                                                                                   gccgccAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGc                                                  >  2:696005/1‑193 (MQ=255)                                                                                                                                                                                                                                     cgccAGGCtttccagtgcgtcgatcagcggcaggccggcattgagcaaggttgacagttcctggctgaacagcaccaggtcgaatgccgcttcacggcgccaggccatgccgcgcagcgcgccgccgctgctgcgcaggctgagcacacgcaggccctggtcttcggcctggcggcgggcctggtcggcgtcctcggcgtcgatctgcaactgcaccacaccctgcctacccaggg     <  1:971209‑M1/236‑229 (MQ=255)                                                                                                                                                                                                                                       ccAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCGGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTg                   <  2:680099/220‑1 (MQ=255)                                                                                                                                                                                                                                        cAGGCtttccagtgcgtcgatcagcggcaggccggcattgagcaaggttgacagttcctggctgaacagcaccaggtcgaatgccgcttcacggcgccaggccatgccgcgcagcgcgccgccgctgctgcgcaggctgagcacacgcaggccctggtcttcggcctggcggcgggcctggtcggcgtcctcggcgtcgatctgcaactgcaccacaccctgcctacccagggcct  <  1:579397‑M1/236‑232 (MQ=255)                                                                                                                                                                                                                                         atgCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCg                                                 <  1:1070137/186‑1 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                        GCAAGACCCGTGGGGCCGCCCTTACATCTACCGGCAACCCGGCGAGAACGGCGGTGAGTACGACCTGCTGTCGATGGGCAAGGACGGCCAGCCGGGTGGCGATGGCGAAAATGCCGAAGTTACTAGTTGGCAGTAAGGAGAGCGGCCATGCGCTACAGCCTCAAGGCCCTGGGTAGGCAGGGTGTGGTGCAGTTGCAGATCGACGCCGAGGACGCCGACCAGGCCCGCCGCCAGGCCGAAGACCAGGGCCTGCGTGTGCTCAGCCTGCGCAGCAGCGGCGGCGCGCTGCGCGGCATGGCCTGGCGCCGTGAAGCGGCATTCGACCTGGTGCTGTTCAGCCAGGAACTGTCAACCTTGCTCAATGCCGGCCTGCCGCTGATCGACGCACTGGAAAGCCTGGCGGAGAAAAGCCCGGCAGCGACAGCGCGCAAGGTGCTCGCCGAGCTGGTGCGTCAGCTGTACGAGGG  >  AE015451/3875383‑3875849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.