New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4042896	60 (0.970)	4 (0.070)	4/334	NT	6.3%	coding (848/978 nt)	PP_3564	Transcriptional regulator, AraC family
	?	AE015451	= 4042909	60 (1.000)					coding (835/978 nt)	PP_3564	Transcriptional regulator, AraC family

GCCACGCTGATGAATCCGGACTTCCGTGAACTGGGCGCTGCCTATGCGATAGACCCCAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4042657‑4042896 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggCGTTTGCTCAACTCCAGCCACAGCCTGGCGCAGATTGCCGATGAGGTGGGCCTGGGTGATGCCAGCTACCTTGGCAAGTGCGTGCGGCGTCGGTTTGGGTGTACGGCCCTGCAGTTGCGTGCAGGTCATTACCCGCTCACGTGATCTACTGCGGCGTCCCGAACAACCCTGTCCAGTAGATCCCTGCATCGCT  <  AE015451/4042909‑4042717                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCCACGCTGATGAATCCGGACTTCCGTGAACTGGGCGCTGCCTATGCGATAGACCCCAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGG                                                                                                                                                                                                       >  1:1113966/1‑236                                     GCTGCCTATGCGATAGACCCCAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTG                                                                                                                                                                                                    >  2:1097600/1‑203                                                                                                                       CGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGCGTTTGCTCAACTCCAGCCACAGCCTGGCGCAGATTGCCGATGAGGTGGGCCTGGGTGATGCCAGCTACC                                                                                                                             >  1:604874/1‑192                                                                                                                        cGGTAACGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGCGTTTGCTCAACTCCAGCCACAGCCTGGCGCAGATTGCCGATGAGGTGGGCCTGGGT                                                                                                                                          <  2:604873/177‑1                                                                                                                                   TGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGACTGTGGCTGG                                                                                                                                                                                                   >  2:155976/1‑110                                                                                                                                                                             GCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGCGTTTGCTCAACTCCAGCCACAGCCTGGCGCAGATTGCCGATGAGGTGGGCCTGGGTGATGCCAGCTACCTTGGCAAGTGCGTGCGGCGTCGGTTTGGGTGTACGGCCCTGCAGTTGCGTGCAGGTCATTACCCGCTCACGTG                                                    >  1:20419/1‑211                                                                                                                                                                                                                                 GCCAGGCTGTGGCTGGCGTTTGCTCAACTCCAGCCACAGCCTGGCGCAGATTGCCGATGAGGTGGGCCTGGGTGATGCCAGCTACCTTGGCAAGTGCGTGCGGCGTCGGTTTGGGTGTACGGCCCTGCAGTTGCGTGCAGGTCATTACCCGCTCACGTGATCTACTGCGGCGTCCC                                   <  2:20419/176‑1                                                                                                                                                                                                                                         ctcgcgGGCGTTTGCTCAACTCCAGCCACAGCCTGGCGCAGATTGCCGATGAGGTGGGCCTGGGTGATGCCAGCTACCTTGGCAAGTGCGTGCGGCGTCGGTTTGGGTGTACGGCCCTGCAGTTGCGTGCAGGTCATTACCCGCTCACGTGATCTACTGCGGCGTCCCGA                                 <  2:160631/164‑1                                                                                                                                                                                                                                              TGGCGTTTGCTCAACTCCGGCCACAGCCTGGCGCAGATTGCCGATGAGGTGGGCCTGGGTGATGCCAGCTACCTTGGCAAGTGCGTGCGGCGTCGGTTTGGGTGTACGGCCCTGCAGTTGCGTGCAGGTCATTACCCGCTCACGTGATCTACTGCGGCGTCCCGAACAACCCTGTCCAGTAGATCCCTGCATCGCT  <  2:522025/196‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCCACGCTGATGAATCCGGACTTCCGTGAACTGGGCGCTGCCTATGCGATAGACCCCAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4042657‑4042896 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggCGTTTGCTCAACTCCAGCCACAGCCTGGCGCAGATTGCCGATGAGGTGGGCCTGGGTGATGCCAGCTACCTTGGCAAGTGCGTGCGGCGTCGGTTTGGGTGTACGGCCCTGCAGTTGCGTGCAGGTCATTACCCGCTCACGTGATCTACTGCGGCGTCCCGAACAACCCTGTCCAGTAGATCCCTGCATCGCT  <  AE015451/4042909‑4042717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.